GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001034-TA|BGIBMGA001034-PA|undefined
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    29   1.2  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    28   1.6  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    27   3.8  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    27   5.0  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   5.0  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    26   6.6  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.7  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        26   8.7  

>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 62  PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRP 95
           PPP     P+  +  PP   +Q  +PP    Y P
Sbjct: 209 PPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPP 242


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 60  QRPPPNHEQIPS-EPNQEPPNYGEQDRFPPNHNGYRPPNG 98
           QR PP+  QIP  +P Q+ P        PPN  G   P+G
Sbjct: 346 QRLPPSSIQIPPPKPMQKFPANAASSESPPNATGNFLPSG 385


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 256 TENPKQPDKTPNYEQNGNQNSNIEKTTKNPDQPLFIPLNPNEYTYGGDKIEVTAPKRDTN 315
           T N KQ     ++ ++ N ++ I K     +  +   +N N+     D +E    + D N
Sbjct: 53  TTNEKQSSPVDSHNESPN-DTTINKGEDGNENEVD-NVNNNDKKEDEDNVEENEEEADAN 110

Query: 316 DKPKPADEDDE 326
           ++ +  +EDDE
Sbjct: 111 EEEEEDEEDDE 121


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 556

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 67 EQIPSEPNQEPPNYGEQDRFPPNHN 91
          +  PS PN++ P   E DRF P+ +
Sbjct: 57 KSFPSSPNKKRPRTNEGDRFIPSRD 81


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 274 QNSNIEKTTKNPDQPLFIPLNPNEYTYGGDKIEVTAPKRDTNDKPKPADED 324
           Q+S+ E+T K    P F   NP E+      ++     RDT   P   ++D
Sbjct: 77  QSSSYEQTRK----PFFHHFNPFEFLEATSPLQQNGKSRDTEKPPSMKEKD 123


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 255 TTENPKQP--DKTPNYEQNGNQNSNIEKTTKNPDQPLFIPLNPNEYTYGGDKIEVTAPKR 312
           T+E  K+P  D   ++++   + S++    K+  +    P    E     ++IE  A  +
Sbjct: 144 TSEEEKEPIQDLRKSHKRKSVEKSSVPNK-KHKAERKRSPSPKIEILEDDEEIEDVASDK 202

Query: 313 DTNDKPKPADEDDE 326
           D  +KP   DE+D+
Sbjct: 203 DEEEKPWSGDEEDD 216


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 67  EQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNG 98
           E+    PNQ P N+   +R P  +N YR  NG
Sbjct: 285 EEYGFNPNQ-PSNFRSPNRAPSTNNRYRGWNG 315


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 73  PNQEPPNYGEQDRFPPNHNGYRPPNGQ 99
           P+  PPN G      PN++G + PN Q
Sbjct: 81  PSGPPPNTGANSYGNPNYSGPQLPNTQ 107


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,547,227
Number of Sequences: 5004
Number of extensions: 64852
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 8
length of query: 336
length of database: 2,362,478
effective HSP length: 73
effective length of query: 263
effective length of database: 1,997,186
effective search space: 525259918
effective search space used: 525259918
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 54 (25.8 bits)