Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001034-TA|BGIBMGA001034-PA|undefined
(336 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) 37 0.020
SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.062
SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3) 33 0.33
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29) 32 0.76
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23) 31 1.3
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051) 31 1.3
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_14279| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_37928| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_31535| Best HMM Match : Oxysterol_BP (HMM E-Value=1.6e-08) 30 2.3
SB_37079| Best HMM Match : Homeobox (HMM E-Value=1.2e-28) 30 3.1
SB_984| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_16879| Best HMM Match : Stig1 (HMM E-Value=1) 29 4.0
SB_47086| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23) 29 5.3
SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_11167| Best HMM Match : Mucin (HMM E-Value=4.9) 29 5.3
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 29 5.3
SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86) 28 9.3
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_32475| Best HMM Match : IWS1_C (HMM E-Value=0) 28 9.3
SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_11360| Best HMM Match : PDZ (HMM E-Value=0) 28 9.3
SB_5670| Best HMM Match : Tsg101 (HMM E-Value=2.5e-20) 28 9.3
SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 28 9.3
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 28 9.3
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23) 28 9.3
>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 536
Score = 37.1 bits (82), Expect = 0.020
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 70 PSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYE 103
P+ +EPP GE D PP G PP G+ G E
Sbjct: 495 PAAEGEEPPPEGEGDDLPPEEGGEVPPEGEEGAE 528
>SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 35.5 bits (78), Expect = 0.062
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 62 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 102
PPP + S P Q+ YG PP GY PP GQ GY
Sbjct: 297 PPPGQQGYGSPPGQQ--GYGP----PPGQQGYGPPAGQQGY 331
Score = 34.7 bits (76), Expect = 0.11
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 62 PPPNHEQIPSEPNQE---PPNYGEQDRFPPNHNGYRPPNGQNGY 102
PPP + P Q+ PP + PP GY PP GQ GY
Sbjct: 279 PPPGQQGYGPPPGQQGYGPPPGQQGYGSPPGQQGYGPPPGQQGY 322
Score = 34.3 bits (75), Expect = 0.14
Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 48 NFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 102
NFN+H + PP Q P P Q YG PP GY PP GQ GY
Sbjct: 213 NFNLH----IVGYGPPG---QQPGSPGQHQ-GYGTLPGPPPGQQGYGPPPGQQGY 259
Score = 33.1 bits (72), Expect = 0.33
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 62 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 102
PPP + P Q+ YG PP GY PP GQ GY
Sbjct: 243 PPPGQQGYGPPPGQQ--GYGA----PPGQQGYGPPLGQQGY 277
>SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
Length = 515
Score = 33.1 bits (72), Expect = 0.33
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 41 GGLSQAFNFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPN 89
G + Q FNV G + P NH P +P Q P +G D+F PN
Sbjct: 167 GHMFQPPGFNVQG----GNKPGPENHSGPPFKPGQRPYQHGGPDQFGPN 211
>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2806
Score = 32.3 bits (70), Expect = 0.57
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 251 NFKPTTENPKQPDKTPNYEQNGNQNSNIEKTTKNPDQPLFIPLNPNEYTYGGDKIEVTAP 310
N+ K P P + ++ N+E TKNPD LF + ++ +GGD A
Sbjct: 895 NWYSPARRSKTPSPRPPSSRPSSRRRNMESFTKNPD--LFY-MTTHQREFGGDNGAPAAN 951
Query: 311 KRDTNDKPKPADED 324
R + K P+ +D
Sbjct: 952 ARPSTAKIFPSRDD 965
>SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 32.3 bits (70), Expect = 0.57
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 253 KPTTENPKQPDKTPNYEQNGNQNSNIEKTTKNPDQPLFIPLNPNEYTYGGDKIEVTAPKR 312
K +T N DK N N +E+ KNP P+ P EYT DK E +
Sbjct: 541 KASTTNDDDQDKA----STTNDNKEVEEIEKNP------PVEPAEYTISEDKREDMFRQI 590
Query: 313 DTNDKPKPADEDD 325
++ DEDD
Sbjct: 591 IKEERTPSTDEDD 603
>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
Length = 1202
Score = 31.9 bits (69), Expect = 0.76
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 54 QFGVNQQRPPPNHEQIPSEPNQEPPNYG--EQDRFPPNHNGYRPPN 97
Q+ NQQ P P H P + + P Y + + PP H+ + PN
Sbjct: 497 QYNQNQQVPHPQHPPPPYQRSASYPGYSPEQYQQVPPPHSQMQQPN 542
>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 31.5 bits (68), Expect = 1.0
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 59 QQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 102
Q PP + + P P Q P +Q P + Y PP Q Y
Sbjct: 300 QSYPPTSQQSYPPTPQQSYPLTSQQSYLPTSQQSY-PPTSQQSY 342
Score = 30.3 bits (65), Expect = 2.3
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 59 QQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 101
Q PP + + P P Q P Q FPP P N Q G
Sbjct: 332 QSYPPTSQQSYPPSPQQSYPQTSIQQNFPPTQ---PPNNSQQG 371
Score = 28.3 bits (60), Expect = 9.3
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 34 QVQGAVLGG-----LSQAFNFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPP 88
Q QGA+ G + + Q G + PP + Q+P+ P +G +P
Sbjct: 637 QYQGAMAGNNQPPTSTMQYQETTRQQMGTTRAYPPHPYAQVPAPCGNVQPQHGHPGMYPQ 696
Query: 89 NHNGYRP 95
+ G P
Sbjct: 697 HPQGSYP 703
>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
Length = 4240
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 253 KPTTENPKQPDKTPNYEQNGNQNSNIEKTTKNPDQP 288
KP+ E ++P P+ ++ GN +N+ K TK DQP
Sbjct: 1993 KPSDE--QKPKAEPSKQRQGNVTANVAKITKAQDQP 2026
>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
Length = 421
Score = 31.1 bits (67), Expect = 1.3
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 53 GQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPP 96
G G NQ PPP H P +P P G + PP GY PP
Sbjct: 168 GYPGYNQ--PPPGHYPAPGQPGGYYPPPGGYQQPPP--GGYAPP 207
>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 30.3 bits (65), Expect = 2.3
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 58 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPN 97
N + P + P PP +G PP++ G+ PPN
Sbjct: 260 NHEGDPYHGGPFNQAPPGFPPRWGPPPHMPPDYRGFPPPN 299
>SB_14279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 57 VNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRP 95
V + +P + IP+E NQ N E D F P G +P
Sbjct: 50 VKKFKPGYQYSSIPTEANQGHQNEEEDDMFDPRPKGLQP 88
>SB_37928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 30.3 bits (65), Expect = 2.3
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 259 PKQPDKT--PNYEQNGNQNSNIEKTTKNPD------QPLFIPLNPNEYTYGGDKIEVTAP 310
P P K P + G QN I TK L + +N NE+T G+ T P
Sbjct: 25 PISPTKIIKPKFMDTGEQNGFIAGYTKPKGGRLHRLHSLNLDVNANEHTNEGESKSSTLP 84
Query: 311 KRDTNDKPKP 320
+R T P P
Sbjct: 85 RRHTTKSPPP 94
>SB_31535| Best HMM Match : Oxysterol_BP (HMM E-Value=1.6e-08)
Length = 836
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 50 NVHGQFGVNQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 97
N+ N PPN Q + + P+ PPN+ + R P+ Y PPN
Sbjct: 140 NISQSVRANPHYSPPNISQSVRANPHYSPPNFRQSVRANPH---YSPPN 185
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 50 NVHGQFGVNQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 97
N+ N PPN Q + + P+ PPN + R P+ Y PPN
Sbjct: 155 NISQSVRANPHYSPPNFRQSVRANPHYSPPNIRQSVRANPH---YSPPN 200
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 50 NVHGQFGVNQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 97
N+ N PPN Q + + P+ PPN + R P+ Y PPN
Sbjct: 200 NISQSVRANPHYSPPNIRQSVRANPHYSPPNISQSVRANPH---YSPPN 245
Score = 29.1 bits (62), Expect = 5.3
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 50 NVHGQFGVNQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 97
N+ N PPN Q + + P+ PPN + R P+ Y PPN
Sbjct: 185 NIRQSVRANPHYSPPNISQSVRANPHYSPPNIRQSVRANPH---YSPPN 230
Score = 28.3 bits (60), Expect = 9.3
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 58 NQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 97
N PPN Q + + P+ PPN + R P+ Y PPN
Sbjct: 133 NPHYSPPNISQSVRANPHYSPPNISQSVRANPH---YSPPN 170
Score = 28.3 bits (60), Expect = 9.3
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 58 NQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 97
N PPN Q + + P+ PPN + R P+ Y PPN
Sbjct: 178 NPHYSPPNIRQSVRANPHYSPPNISQSVRANPH---YSPPN 215
>SB_37079| Best HMM Match : Homeobox (HMM E-Value=1.2e-28)
Length = 246
Score = 29.9 bits (64), Expect = 3.1
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 59 QQRP--PPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQN 100
Q +P PP + S P Q+PP R P + Y+PPN N
Sbjct: 139 QHKPATPPQSHYVNSNPWQQPP---VDMRMPMGRSNYQPPNMMN 179
>SB_984| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 29.5 bits (63), Expect = 4.0
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 63 PPNHEQIPSEPN---QEPP-NYGEQDRFPPNHNGYRPPNGQN 100
PP Q P +P Q PP NY P G +PP GQN
Sbjct: 171 PPGVYQGPHQPPPYCQPPPGNYSGYGAMDPRQGGAQPPMGQN 212
>SB_16879| Best HMM Match : Stig1 (HMM E-Value=1)
Length = 232
Score = 29.5 bits (63), Expect = 4.0
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 63 PPNHEQIPSEPN---QEPP-NYGEQDRFPPNHNGYRPPNGQN 100
PP Q P +P Q PP NY P G +PP GQN
Sbjct: 171 PPGVYQGPHQPPPYCQPPPGNYSGYGAMDPRQGGAQPPMGQN 212
>SB_47086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 29.1 bits (62), Expect = 5.3
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 58 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYE 103
N R PP++ + + ++ PP+Y E PNHN R N E
Sbjct: 406 NLFRGPPSYHSVCLD-HELPPSYDEAVNLCPNHNPVRTDRTANASE 450
>SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)
Length = 1178
Score = 29.1 bits (62), Expect = 5.3
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 63 PPNHEQIPSEPNQEPPNYGEQDRFP---PNH-NGYRP 95
PP Q+PSEP P+ G P NH NGY P
Sbjct: 66 PPGRRQVPSEPWYHHPDSGYPSSSPTSKSNHYNGYLP 102
>SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1513
Score = 29.1 bits (62), Expect = 5.3
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 263 DKTPNYEQNGNQNSNIEKTTKNPDQPLFIPLN----PNEYTYGGDKIEVTAPK-RDTNDK 317
D TP + N +N++ T+ P F P++ P + K+ V P+ + DK
Sbjct: 495 DDTPRSAPSSNSEANVDITSDRPQAQEFAPIHLTIAPVQEAEVEAKVVVRGPRISNLIDK 554
Query: 318 PKPADEDDEYA 328
K DE+D YA
Sbjct: 555 MK-EDEEDGYA 564
>SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 29.1 bits (62), Expect = 5.3
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 63 PPNHEQIPSEPNQEPPNYGEQDRFP---PNH-NGYRP 95
PP Q+PSEP P+ G P NH NGY P
Sbjct: 110 PPGRRQVPSEPWYHHPDSGYPSSSPTSKSNHYNGYLP 146
>SB_11167| Best HMM Match : Mucin (HMM E-Value=4.9)
Length = 297
Score = 29.1 bits (62), Expect = 5.3
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 44 SQAFNFNVHGQFGVNQQRPPPNHEQIPSEPNQEP-PNYGEQD 84
S F +G FG ++Q P N + S P+QE P + +QD
Sbjct: 131 SLCFTVTPNGYFGTSRQNPAYNADGCTSGPSQETGPVHNQQD 172
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 29.1 bits (62), Expect = 5.3
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 56 GVNQQRPPPNHEQIPSEPNQEPPNYG--EQDRFPP 88
G + Q PPP E +PS+ + PP YG Q+ PP
Sbjct: 636 GQSMQPPPPKTEGVPSQ--EYPPGYGVEGQESQPP 668
>SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)
Length = 809
Score = 28.3 bits (60), Expect = 9.3
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 54 QFGVNQQRPP-PNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 101
Q+ VN+Q+ P P +Q + N Y ++ FP H P G G
Sbjct: 571 QYQVNEQQGPMPQQQQPQGDMNCGSYQYNRRNSFPLYHRAMSQPAGAYG 619
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 28.3 bits (60), Expect = 9.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 65 NHEQIPSEPNQEPPNYGEQDRFPPNHNG 92
++E P +P QEPP + +P +H G
Sbjct: 449 SYESSPPDPTQEPPRHVASKSWPSDHLG 476
>SB_32475| Best HMM Match : IWS1_C (HMM E-Value=0)
Length = 768
Score = 28.3 bits (60), Expect = 9.3
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 257 ENPKQPDKTPNYEQNGNQNSNIEKTTKNPDQPLFIPLNPNEYTYGGDK--IEVTAPKRDT 314
E + +K P +N ++ + +K K D+ NE GD+ EVT K D
Sbjct: 127 ECSNEEEKEPEEIKNKSEMGDSDKEDKKNDEDDVFGDESNEGIKSGDEETEEVTRDKTDN 186
Query: 315 NDKPKPADEDDE 326
+DK + +E+ E
Sbjct: 187 DDKMEEDEEELE 198
>SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 28.3 bits (60), Expect = 9.3
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 279 EKTTKNPDQPLFIPLNPNEYTYGGDKIEVTAPKRDTNDKPKPADED 324
E+ T N D P+F ++ G IE+ A R+ ND +D D
Sbjct: 477 ERETINADMPVFFVRGIRTFSLFGSAIELEALYREVNDFSLMSDGD 522
>SB_11360| Best HMM Match : PDZ (HMM E-Value=0)
Length = 625
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 59 QQRPPPNHEQIPSEPNQEPPNYGEQDRFPP 88
Q PPP E I + P+ P GE + PP
Sbjct: 122 QTPPPPTPEVIETAPSPSPGENGEVNHVPP 151
>SB_5670| Best HMM Match : Tsg101 (HMM E-Value=2.5e-20)
Length = 315
Score = 28.3 bits (60), Expect = 9.3
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 75 QEPPNYGEQDRF-PPNHNGYRPP 96
+EPP Y + + + PP GYRPP
Sbjct: 43 EEPPVYAKPNNYQPPPQPGYRPP 65
>SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 506
Score = 28.3 bits (60), Expect = 9.3
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 61 RPPPN--HEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 101
R PP+ H+ + SE ++E E D P N Y P NG
Sbjct: 321 RQPPSIPHDLVTSEQDRESKFLHEFDELPDIENAYTPLPSMNG 363
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 28.3 bits (60), Expect = 9.3
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 61 RPPPNHEQIPSEPNQEPPNY----GEQDRFPPNHNGYRPP 96
R PP+H + PS + PP++ R+ P+H Y PP
Sbjct: 382 RYPPSHSRYPSSHPRYPPSHLRYPPSSLRYLPSHLRYPPP 421
>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
Length = 3368
Score = 28.3 bits (60), Expect = 9.3
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 251 NFKPTTENPKQPDKTPNYEQNGNQNSNIEKTTKNPDQPL-FIPLNPNEYTYGGDKIEVTA 309
N KPTT N +P T N N+N + TT N L +E T + ++ A
Sbjct: 3127 NSKPTTNNNSKP--TTNNNSKPTTNNNSKPTTNNKKVNLNNTNKKDSELTETQEIVQEVA 3184
Query: 310 PKRDTNDKPKPADEDDEYAIDIRFKD 335
PK+ + + +D R KD
Sbjct: 3185 PKQRKSVRFSDTVQDTPEKCAARSKD 3210
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.310 0.136 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,547,325
Number of Sequences: 59808
Number of extensions: 493244
Number of successful extensions: 1430
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1372
Number of HSP's gapped (non-prelim): 72
length of query: 336
length of database: 16,821,457
effective HSP length: 83
effective length of query: 253
effective length of database: 11,857,393
effective search space: 2999920429
effective search space used: 2999920429
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 60 (28.3 bits)
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