GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001034-TA|BGIBMGA001034-PA|undefined
         (336 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    27   0.56 
AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeo...    26   1.7  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    23   9.2  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    23   9.2  

>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 27.5 bits (58), Expect = 0.56
 Identities = 13/34 (38%), Positives = 13/34 (38%)

Query: 63  PPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPP 96
           PP    IP  P   P   G     PP   G RPP
Sbjct: 86  PPRPGMIPGMPGAPPLLMGPNGPLPPPMMGMRPP 119


>AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeotic
           protein protein.
          Length = 324

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 70  PSEPNQEPPNYGEQDRFPPNHNGYR-PPNGQN 100
           P    Q+ PN   Q   PP H G + PPN QN
Sbjct: 195 PPGVTQQQPNMMHQQP-PPLHQGQQAPPNSQN 225



 Score = 25.0 bits (52), Expect = 3.0
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 53  GQFGVNQQRPPPNHEQIP--SEPNQEPPN 79
           G  GV QQ+P   H+Q P   +  Q PPN
Sbjct: 194 GPPGVTQQQPNMMHQQPPPLHQGQQAPPN 222



 Score = 24.6 bits (51), Expect = 4.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 62  PPPNHEQIPSEPNQEPPNYGEQDRFPPN 89
           PP   +Q P+  +Q+PP   +  + PPN
Sbjct: 195 PPGVTQQQPNMMHQQPPPLHQGQQAPPN 222



 Score = 23.8 bits (49), Expect = 6.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 60  QRPPPNHEQIPSEPNQEPPNYGEQDRFPP 88
           Q+PPP H+   + PN +  + G Q    P
Sbjct: 208 QQPPPLHQGQQAPPNSQNASSGLQSPLYP 236


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 13/50 (26%), Positives = 18/50 (36%)

Query: 53  GQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 102
           G+ G   Q  P   + +P  P  E     + D+      G   P G  GY
Sbjct: 435 GEKGERGQMGPKGGQGVPGRPGPEGMPGDKGDKGESGSVGMPGPQGPRGY 484


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 70  PSEPNQ--EPPNYGEQDRFPPNHNGYRPPNGQNG 101
           P E  Q  E P    Q + PP   G+  P G  G
Sbjct: 698 PGEKGQKGETPQLPPQRKGPPGPPGFNGPKGDKG 731


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.310    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 351,541
Number of Sequences: 2123
Number of extensions: 15402
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 9
length of query: 336
length of database: 516,269
effective HSP length: 64
effective length of query: 272
effective length of database: 380,397
effective search space: 103467984
effective search space used: 103467984
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 48 (23.4 bits)