Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001034-TA|BGIBMGA001034-PA|undefined
(336 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39740.1 68415.m04880 expressed protein 34 0.16
At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containi... 33 0.36
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 32 0.63
At4g19590.1 68417.m02879 DNAJ heat shock N-terminal domain-conta... 32 0.63
At2g14010.1 68415.m01557 hypothetical protein and genefinder 32 0.63
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 31 0.83
At3g16630.2 68416.m02126 kinesin motor family protein similar to... 31 0.83
At3g16630.1 68416.m02125 kinesin motor family protein similar to... 31 0.83
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 31 0.83
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 31 1.1
At1g12810.1 68414.m01488 proline-rich family protein contains pr... 31 1.1
At2g37780.1 68415.m04639 DC1 domain-containing protein contains ... 31 1.4
At4g32640.1 68417.m04646 sec23/sec24 transport protein-related 30 1.9
At4g03120.1 68417.m00425 proline-rich family protein similar to ... 30 1.9
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t... 30 1.9
At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family... 30 2.5
At4g08013.1 68417.m01283 hypothetical protein low similarity to ... 30 2.5
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 3.3
At1g05577.1 68414.m00577 hypothetical protein 29 3.3
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 29 4.4
At3g16510.1 68416.m02107 C2 domain-containing protein contains s... 29 4.4
At3g08790.1 68416.m01021 VHS domain-containing protein / GAT dom... 29 4.4
At2g18470.1 68415.m02151 protein kinase family protein contains ... 29 4.4
At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ... 29 5.8
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 29 5.8
At3g01560.1 68416.m00086 proline-rich family protein contains pr... 29 5.8
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 29 5.8
At5g59170.1 68418.m07416 proline-rich family protein contains pr... 28 7.7
At5g51300.2 68418.m06360 splicing factor-related contains simila... 28 7.7
At5g51300.1 68418.m06359 splicing factor-related contains simila... 28 7.7
At5g18700.1 68418.m02219 protein kinase-related contains protein... 28 7.7
At4g25520.1 68417.m03680 transcriptional co-regulator family pro... 28 7.7
At3g30520.1 68416.m03863 hypothetical protein 28 7.7
At1g33680.1 68414.m04166 KH domain-containing protein similar to... 28 7.7
>At2g39740.1 68415.m04880 expressed protein
Length = 474
Score = 33.9 bits (74), Expect = 0.16
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 12 VVSECNGGLITGILSGAHDVHKQVQGAVLGGLSQAFNF----NVHGQFGVNQQRPPPNHE 67
+VSECN I GIL+G H + L A N+HGQ Q+ N
Sbjct: 294 LVSECNRNSIIGILTGQHIQESLYRTISLPSQHHANGMHNVRNLHGQARPQNQQMQQNWS 353
Query: 68 QIPSEPNQEPPNYGEQDRFPPNHN 91
Q + PN PP++ + P N
Sbjct: 354 QSYNTPN--PPHWPPLTQSRPQQN 375
>At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 579
Score = 32.7 bits (71), Expect = 0.36
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 26 SGAHDVHKQVQGAVLGGLSQAF---NFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGE 82
+ A+D H+ Q + + +F+ Q NQ R P + Q ++ + P YG
Sbjct: 53 AAANDYHQNPQSGSPSQHQRPYPPQSFDSQNQTNTNQ-RVPQSPNQWSTQHGGQIPQYGG 111
Query: 83 QDRFPPNHNGYRPP-NGQN 100
Q+ P H G RPP GQN
Sbjct: 112 QN---PQHGGQRPPYGGQN 127
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 31.9 bits (69), Expect = 0.63
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 59 QQRPPPNHEQIPSEPNQEPPNYGEQDR---FPP---NHNGYRPPNGQNG 101
Q PPP + P P PP YG Q R PP G PP+G G
Sbjct: 170 QGGPPPPYGMRPPYPGPPPPQYGGQQRPMMIPPPGGMMRGPPPPHGMQG 218
>At4g19590.1 68417.m02879 DNAJ heat shock N-terminal
domain-containing protein protein YJL162c, Saccharomyces
cerevisiae, PIR2:S56945; contains Pfam PF00226: DnaJ
domain;
Length = 345
Score = 31.9 bits (69), Expect = 0.63
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 58 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPN 97
NQQ+ PP+ ++ P ++PPN +Q P + +PPN
Sbjct: 149 NQQKQPPDQQKQPPNQPRQPPNQQKQ----PQNEPKQPPN 184
Score = 31.9 bits (69), Expect = 0.63
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 58 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPN 89
NQ R PPN ++ P ++PPN Q + PPN
Sbjct: 163 NQPRQPPNQQKQPQNEPKQPPN---QPKQPPN 191
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 58 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPN 89
NQ + PN ++ P + ++PPN Q R PPN
Sbjct: 142 NQPKQQPNQQKQPPDQQKQPPN---QPRQPPN 170
>At2g14010.1 68415.m01557 hypothetical protein and genefinder
Length = 833
Score = 31.9 bits (69), Expect = 0.63
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 270 QNGNQNSNIEKTTKNPDQP--LFIPLNPN--EYTYGGDKIEVTAPK-----RDTNDKPKP 320
Q+GN +S T PD+ L PLNP+ + Y + +T P ++NDK +P
Sbjct: 490 QDGNHDSPSSNETSIPDEAPQLQSPLNPDTEDTAYIESEPNITEPSMFEADENSNDKTRP 549
Query: 321 ADEDDE 326
+DDE
Sbjct: 550 HPQDDE 555
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 31.5 bits (68), Expect = 0.83
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 62 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPN 97
PPP ++ PS P+ PP + PP+H+ P N
Sbjct: 135 PPPAPKKSPSTPSLPPPTPKKSPPPPPSHHSSSPSN 170
>At3g16630.2 68416.m02126 kinesin motor family protein similar to
mitotic centromere-associated kinesin GB:AAC27660 from
[Homo sapiens]; contains Pfam profile PF00225: Kinesin
motor domain
Length = 794
Score = 31.5 bits (68), Expect = 0.83
Identities = 18/77 (23%), Positives = 34/77 (44%)
Query: 249 HINFKPTTENPKQPDKTPNYEQNGNQNSNIEKTTKNPDQPLFIPLNPNEYTYGGDKIEVT 308
H+ +P +P P +E++ N +N ++ + +PL + ++ KI+V
Sbjct: 138 HVITEPFEPSPFMPSVNKEFEEDYNLAANRQQRQQTEAEPLGLLPKSDKENNSVAKIKVV 197
Query: 309 APKRDTNDKPKPADEDD 325
KR N K E+D
Sbjct: 198 VRKRPLNKKETAKKEED 214
>At3g16630.1 68416.m02125 kinesin motor family protein similar to
mitotic centromere-associated kinesin GB:AAC27660 from
[Homo sapiens]; contains Pfam profile PF00225: Kinesin
motor domain
Length = 794
Score = 31.5 bits (68), Expect = 0.83
Identities = 18/77 (23%), Positives = 34/77 (44%)
Query: 249 HINFKPTTENPKQPDKTPNYEQNGNQNSNIEKTTKNPDQPLFIPLNPNEYTYGGDKIEVT 308
H+ +P +P P +E++ N +N ++ + +PL + ++ KI+V
Sbjct: 138 HVITEPFEPSPFMPSVNKEFEEDYNLAANRQQRQQTEAEPLGLLPKSDKENNSVAKIKVV 197
Query: 309 APKRDTNDKPKPADEDD 325
KR N K E+D
Sbjct: 198 VRKRPLNKKETAKKEED 214
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 31.5 bits (68), Expect = 0.83
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 62 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNG 98
PPP+H P + PP + PP HN +PP G
Sbjct: 619 PPPSHSPPPPVYSPPPPTFSP----PPTHNTNQPPMG 651
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 255 TTENPKQPDKTPN---YEQNGNQNSNIEKTTKNPDQPLFIPLNPNE 297
T NP + PN N N N N +++ NP+ P+ +P NP E
Sbjct: 127 TVPNPPESSSNPNPPDSSSNPNSNPNPPESSSNPNPPVTVP-NPPE 171
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 255 TTENPKQPDKTPNYEQNGNQNSNIEKTTKNPDQPLFIPLNPNEYTYGGDKIEVTAPK 311
++ NP P PN ++ + N N +++ NP+ P+ IP P + +I + P+
Sbjct: 156 SSSNPNPPVTVPNPPESSS-NPNPPESSSNPNPPITIPYPPESSSPNPPEIVPSPPE 211
>At1g12810.1 68414.m01488 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 129
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 56 GVNQQRPPPNHEQIPSEPNQ-EPPNYGEQDRFPPNHNGYRPPNG---QNGYE 103
G PPP + P P PP++ E P + GY PP+ + GY+
Sbjct: 15 GYQSHYPPPGYPSAPPPPGYPSPPSHHEGYPPPQPYGGYPPPSSRPYEGGYQ 66
>At2g37780.1 68415.m04639 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain
Length = 286
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 57 VNQQRPPPNHEQIPSEPNQEP-------PNYGEQDRFPPNHNGYRPPNGQNGY 102
V +QR H PS P+Q P+ G+ + +PP GY+P N QN Y
Sbjct: 121 VTKQRSLHGHAGQPSPPHQYGQGIPYGYPHMGQPEPYPPQGGGYQPQN-QNYY 172
>At4g32640.1 68417.m04646 sec23/sec24 transport protein-related
Length = 1069
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 61 RPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNG 98
RPPP Q P Q+ P+YG R P + PP G
Sbjct: 56 RPPPPFGQSPQPFPQQSPSYGAPQRGPSPMSRPGPPAG 93
>At4g03120.1 68417.m00425 proline-rich family protein similar to U1
small nuclear ribonucleoprotein C; contains proline rich
extensin domains, INTERPRO:IPR002965
Length = 207
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 63 PPNHEQIPSEPNQEPPNYGEQDRFPPNH-NGYRPPNG 98
PP IP + PPNY PP H N PP+G
Sbjct: 150 PPGMAPIPGQGGGPPPNYNGLPPPPPYHTNPAAPPSG 186
>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to auxin
down regulated GB:X69640 GI:296442 from [Glycine max];
contains Pfam profile PF00234: Protease inhibitor/seed
storage/LTP family
Length = 297
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 52 HGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNG 92
HG G +PPP+H + +PP +G + PP+H G
Sbjct: 43 HGGGGGGGSKPPPHHG---GKGGGKPPPHGGKGGGPPHHGG 80
>At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family
protein Common family members: At5g26070, At5g19800,
At1g72790 [Arabidopsis thaliana]
Length = 575
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 259 PKQPDKTPNY-EQNGNQNSNIEKTTKNPDQPLFIPLNPNEYTYGGDKIEVTAPKRDTNDK 317
P +P K N+ E+N Q S + + T P P + P +Y GD ++ + +
Sbjct: 448 PPRPTKPKNFNEENNGQGSPLIQITPPPPPPPPFRVPPLKYVVSGDFAKIRSNQSSRCSS 507
Query: 318 PKPADEDDEYAIDIRFKD 335
P+ D + +++ D
Sbjct: 508 PEREVFDIGWGLELTQSD 525
>At4g08013.1 68417.m01283 hypothetical protein low similarity to
SCARECROW [Zea mays] GI:10178637
Length = 113
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 62 PPPNHEQIPSEPNQEPPNYGEQDRFP-PNHNGYRPPNGQ 99
PPP E+ P E P EQ P PN Y P+ Q
Sbjct: 57 PPPRSEEAQFNPPPEAPLNQEQSESPNPNSQAYTHPSSQ 95
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 59 QQRPPPNHEQIPSEPNQEPPNYGEQ-DRFPPNHNGYRPPNGQ 99
Q PPP+ PS P PP+ PP+ + PP+ Q
Sbjct: 27 QSSPPPSDSSSPSPPAPPPPDDSSNGSPQPPSSDSQSPPSPQ 68
>At1g05577.1 68414.m00577 hypothetical protein
Length = 372
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 286 DQPLFIPLNPNEYTYGGDKIEVTAPKRDTNDKPKPA 321
D L P++ NEY G +I +++PK D + K A
Sbjct: 81 DDDLITPISDNEYVLKGSEILLSSPKEDYPNVEKKA 116
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 62 PPPNHEQ--IPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 102
PP + Q P P PP +PP GY P G GY
Sbjct: 28 PPAGYPQQGYPPPPGAYPPAGYPPGAYPPAPGGYPPAPGYGGY 70
>At3g16510.1 68416.m02107 C2 domain-containing protein contains
similarity to shock protein SRC2 [Glycine max]
gi|2055230|dbj|BAA19769 ; contains Pfam profile
PF00168:C2 domain
Length = 360
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 62 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYE 103
PPP PS N PP Y PP H Y PP G + ++
Sbjct: 244 PPP-----PSASNLYPPPYYSTS--PPQHQSYPPPPGHSFHQ 278
>At3g08790.1 68416.m01021 VHS domain-containing protein / GAT
domain-containing protein weak similarity to
HGF-regulated tyrosine kinase substrate [Mus musculus]
GI:1089781; contains Pfam profiles PF00790: VHS domain,
PF03127: GAT domain
Length = 607
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 269 EQNGNQNSNIEKTTKNPDQPLFIPLNPN-EYTYGGDKIEVTAPKRDTNDK 317
+ NGN N+N + + + P+ P+N E GD +E++ K+ T+ +
Sbjct: 554 QDNGNNNTNPYQVSSHQPPPMMKPMNKKPEDKLFGDLVELSKFKKPTSGR 603
>At2g18470.1 68415.m02151 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 633
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 56 GVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNH--NGYRPPNGQNG 101
G + PPP+ P+ PPN PP+ G R G NG
Sbjct: 43 GDSSSSPPPDSTSPPAPQAPNPPNSSNNSPSPPSQGGGGERGNGGNNG 90
>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
identical to ubiquitin-specific protease 21 GI:11993482
[Arabidopsis thaliana]
Length = 732
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 253 KPTTENPKQPDKTPNYEQNGNQNSNIEKTTKNP-DQPLFIP 292
KP + PDKT N+ N++ N ++++ +P D+ L P
Sbjct: 58 KPDGSSSSPPDKTLNFNPEENRDVNPDESSSSPSDKTLIAP 98
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 56 GVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYE 103
G N + PP + P P ++PP++ P PP + Y+
Sbjct: 350 GYNPEEPPYPQQSYPPNPPRQPPSHPPPGSAPSQQYYNAPPTPPSMYD 397
>At3g01560.1 68416.m00086 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 511
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 54 QFGVNQQR--PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 102
QF Q+ PPP+H P P PP Y P+ Y+ P Q Y
Sbjct: 278 QFSSQQEPYCPPPSH---PQPPPSNPPPYQAPQTQTPHQPSYQSPPQQPQY 325
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 41 GGLSQAFNFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNY 80
G S ++ HG + +Q PPP++ P Q+ P Y
Sbjct: 384 GASSSSYTMPPHGHYPQHQPYPPPSYGGYMQPPYQQYPPY 423
>At5g59170.1 68418.m07416 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 288
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 59 QQRPPPNHEQIPSEPNQEP-PNYGEQDRFPPNHNGYRPP 96
+Q PPP + P E P Y Q+++PP Y PP
Sbjct: 144 EQYPPPIKKYPPPEHYPPPIKKYPPQEQYPPPIKKYPPP 182
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 51 VHGQ----FGVNQQRPPPNHEQIPSEPNQEPPNYGE-QDRFPP 88
VHGQ +G+ PPP+ Q P + P+ E Q FPP
Sbjct: 628 VHGQHMPPYGMQYPPPPPHVTQAPPPGTTQNPSSSEPQQSFPP 670
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 51 VHGQ----FGVNQQRPPPNHEQIPSEPNQEPPNYGE-QDRFPP 88
VHGQ +G+ PPP+ Q P + P+ E Q FPP
Sbjct: 628 VHGQHMPPYGMQYPPPPPHVTQAPPPGTTQNPSSSEPQQSFPP 670
>At5g18700.1 68418.m02219 protein kinase-related contains protein
kinase domain, INTERPRO:IPR000719
Length = 1366
Score = 28.3 bits (60), Expect = 7.7
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 250 INFKP--TTENPKQPDKTP-NYEQNGNQNSNIEKTTKNPDQPLFIPLNPNEYTYGGDKIE 306
IN KP + N +P+KTP Y + + + K +N Q P + T GG K +
Sbjct: 274 INTKPCLSERNGDRPNKTPPKYREKDRKGGS--KQNENSIQGSKGHETPIKGTPGGSKAQ 331
Query: 307 VTAPKRDTNDK 317
P R T +K
Sbjct: 332 AKLPSRATEEK 342
>At4g25520.1 68417.m03680 transcriptional co-regulator family
protein contains similarity to GP|18033922|gb|AAL57277
SEUSS transcriptional co-regulator [Arabidopsis
thaliana]
Length = 748
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 48 NFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPN 79
N N Q G + Q P PN Q PS +Q+ N
Sbjct: 578 NSNTGKQEGFSSQNPTPNSNQSPSSSSQQRHN 609
>At3g30520.1 68416.m03863 hypothetical protein
Length = 397
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 61 RPPPNHEQIPSEPN----QEPPNYGEQDRFPPNHNGYRPPNGQNGY 102
R PPN Q + PN + PPN PPN +G P N Q G+
Sbjct: 296 RTPPNVAQWGTPPNVAQCRTPPNAPHWGT-PPNAHGTTPTNVQYGF 340
>At1g33680.1 68414.m04166 KH domain-containing protein similar to
FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
sapiens]
Length = 759
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 62 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 102
PP + P P+ P NY +P + +RPPN GY
Sbjct: 411 PPQWGSRGPHGPHSMPYNYHHGGPYPSQGSHFRPPN-SGGY 450
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.310 0.136 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,009,139
Number of Sequences: 28952
Number of extensions: 344414
Number of successful extensions: 922
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 882
Number of HSP's gapped (non-prelim): 60
length of query: 336
length of database: 12,070,560
effective HSP length: 81
effective length of query: 255
effective length of database: 9,725,448
effective search space: 2479989240
effective search space used: 2479989240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 60 (28.3 bits)
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