Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001033-TA|BGIBMGA001033-PA|IPR000301|CD9/CD37/CD63
antigen, IPR008952|Tetraspanin
         (238 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0649 - 18402976-18403220,18403305-18404499                       29   4.4  

>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 8   DGTALLAKKKKVKPRAGVLGVGVWNVTY 35
           DG A++A+K     R G+LG  +W V Y
Sbjct: 361 DGVAVVAEKLAFAARCGLLGYFLWPVNY 388


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.141    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,245,327
Number of Sequences: 37544
Number of extensions: 230562
Number of successful extensions: 630
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 629
Number of HSP's gapped (non-prelim): 1
length of query: 238
length of database: 14,793,348
effective HSP length: 80
effective length of query: 158
effective length of database: 11,789,828
effective search space: 1862792824
effective search space used: 1862792824
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)