GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001033-TA|BGIBMGA001033-PA|IPR000301|CD9/CD37/CD63
antigen, IPR008952|Tetraspanin
         (238 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.1  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    23   2.1  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    23   2.1  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.8  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.8  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.8  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.4  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.4  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 30  VWNVTYRHHYVSLLPTITYPAIGYLLVI 57
           +W +     ++SL  T T PAIG  ++I
Sbjct: 148 LWKMPSLSEFLSLFGTETCPAIGSAILI 175


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 30  VWNVTYRHHYVSLLPTITYPAIGYLLVI 57
           +W +     ++SL  T T PAIG  ++I
Sbjct: 148 LWKMPSLSEFLSLFGTETCPAIGSAILI 175


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory
          receptor candidate 45 protein.
          Length = 379

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 8  DGTALLAKKKKVKPRAGVLGVGV-WNVTYRHHYVSLLPTITYPAIGYL---LVIAGSF 61
          D    L KK +      ++  G  +++  RH Y   L TIT+  + YL   L++A +F
Sbjct: 36 DSQKSLWKKIQGVVLVSIIAAGTAYSIYVRHTYYRRLYTITHLVLDYLDEFLIVALAF 93


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory
          receptor candidate 8 protein.
          Length = 379

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 8  DGTALLAKKKKVKPRAGVLGVGV-WNVTYRHHYVSLLPTITYPAIGYL---LVIAGSF 61
          D    L KK +      ++  G  +++  RH Y   L TIT+  + YL   L++A +F
Sbjct: 36 DSQKSLWKKIQGVVLVSIIAAGTAYSIYVRHTYYRRLYTITHLVLDYLDEFLIVALAF 93


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 218 IPIFGFLFSCVLYVKIKHVI 237
           IP+ G  F+C++++    V+
Sbjct: 271 IPLLGTYFNCIMFMVASSVV 290


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 218 IPIFGFLFSCVLYVKIKHVI 237
           IP+ G  F+C++++    V+
Sbjct: 271 IPLLGTYFNCIMFMVASSVV 290


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 218 IPIFGFLFSCVLYVKIKHVI 237
           IP+ G  F+C++++    V+
Sbjct: 271 IPLLGTYFNCIMFMVASSVV 290


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 5/20 (25%), Positives = 13/20 (65%)

Query: 218 IPIFGFLFSCVLYVKIKHVI 237
           +P+ G  F+C++++    V+
Sbjct: 271 VPLIGTYFNCIMFMVASSVV 290


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 5/20 (25%), Positives = 13/20 (65%)

Query: 218 IPIFGFLFSCVLYVKIKHVI 237
           +P+ G  F+C++++    V+
Sbjct: 271 VPLIGTYFNCIMFMVASSVV 290


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.327    0.141    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,730
Number of Sequences: 317
Number of extensions: 1995
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 9
length of query: 238
length of database: 114,650
effective HSP length: 55
effective length of query: 183
effective length of database: 97,215
effective search space: 17790345
effective search space used: 17790345
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 42 (21.0 bits)