GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001033-TA|BGIBMGA001033-PA|IPR000301|CD9/CD37/CD63
antigen, IPR008952|Tetraspanin
         (238 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    27   3.2  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   7.4  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   7.4  
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    25   9.7  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    25   9.7  

>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 18  KVKPRAGVLGVGVWNVTYRHHY 39
           K+      +G+G+WN+ Y H Y
Sbjct: 592 KIAYEQSSIGMGLWNMAYMHEY 613


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 173 KTRTQRCGTRDHPSNIYYTGCIHHFT 198
           KTR  R     H ++I+  GCI ++T
Sbjct: 848 KTREGRIRQASHATDIFALGCIFYYT 873


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 154 RKSRWHEHDPRLLVPDSCCKTRTQRC 179
           R S +H+ D  +++    CKT  Q+C
Sbjct: 58  RHSYYHKRDNEVIIGLKICKTLVQKC 83


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 51  IGYLLVIAGSFGLPFAALGCC 71
           IG+ L  + ++G P    GCC
Sbjct: 150 IGFFLFASDTYGTPSTGTGCC 170


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 191 TGCIHHFTNHIRDQLIILAA 210
           T  IH F N++RD LI+L A
Sbjct: 401 TPSIHDFFNNLRDGLILLQA 420


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.141    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 977,546
Number of Sequences: 5004
Number of extensions: 36020
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 5
length of query: 238
length of database: 2,362,478
effective HSP length: 71
effective length of query: 167
effective length of database: 2,007,194
effective search space: 335201398
effective search space used: 335201398
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)