Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001033-TA|BGIBMGA001033-PA|IPR000301|CD9/CD37/CD63
antigen, IPR008952|Tetraspanin
(238 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 51 1e-08
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.7
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 22 5.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.6
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 7.6
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 50.8 bits (116), Expect = 1e-08
Identities = 38/192 (19%), Positives = 71/192 (36%), Gaps = 17/192 (8%)
Query: 46 ITYPAIGYLLVIAGSFGLPFAALGCCGLKTENRTSLLCYTYFLL-ITFIXXXXXXXXXXX 104
+ +P+I L++ GS + GCCG E+ + + FLL I +
Sbjct: 48 LAFPSI--TLIVLGSIIFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIV 105
Query: 105 XXXXXXXXXXXXXNSTFTTNYALDTAVTDAVDSMQTEFKCCGAIRYEDWRKSRWHEHDPR 164
Y L++ D +D +Q +CCG D+
Sbjct: 106 VKNDDNFRNISEKYQEIFNGYFLNSESKDFIDFIQKNLQCCGVHSLSDYNDKP------- 158
Query: 165 LLVPDSCCKT-RTQRCGTRDHPSNIYYTGCIHHFTNHIRDQLIILAAVGVGMSVIPIFGF 223
+P SCC + C SN Y GC+ + ++ + +V + ++++ + G
Sbjct: 159 --IPASCCNSPENNTCSI----SNSYTNGCVEALKDTVKLAGTVFGSVAIAIAIVELIGI 212
Query: 224 LFSCVLYVKIKH 235
+ + L IK+
Sbjct: 213 ICALCLANSIKN 224
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.7
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 218 IPIFGFLFSCVLYVKIKHVI 237
IP+ G F+C++++ V+
Sbjct: 254 IPLLGSYFNCIMFMVASSVV 273
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.7
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 218 IPIFGFLFSCVLYVKIKHVI 237
IP+ G F+C++++ V+
Sbjct: 254 IPLLGSYFNCIMFMVASSVV 273
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.7
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 218 IPIFGFLFSCVLYVKIKHVI 237
IP+ G F+C++++ V+
Sbjct: 254 IPLLGSYFNCIMFMVASSVV 273
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 21.8 bits (44), Expect = 5.7
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 8 DGTALLAKKKKVKPRAGVLGVGVWNV 33
D L KK KV P G+G W V
Sbjct: 131 DIAGLRKKKHKVNPLLMQSGMGSWEV 156
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 5.7
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 218 IPIFGFLFSCVLYVKIKHVI 237
IP+ G F+C++++ V+
Sbjct: 322 IPLLGSYFNCIMFMVASSVV 341
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.6
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 218 IPIFGFLFSCVLYVKIKHVI 237
+P+ G F+C++++ V+
Sbjct: 254 VPLIGSYFNCIMFMVASSVV 273
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.6
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 218 IPIFGFLFSCVLYVKIKHVI 237
+P+ G F+C++++ V+
Sbjct: 254 VPLIGSYFNCIMFMVASSVV 273
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.6
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 218 IPIFGFLFSCVLYVKIKHVI 237
+P+ G F+C++++ V+
Sbjct: 254 VPLIGSYFNCIMFMVASSVV 273
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.6
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 218 IPIFGFLFSCVLYVKIKHVI 237
+P+ G F+C++++ V+
Sbjct: 322 VPLIGSYFNCIMFMVASSVV 341
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.4 bits (43), Expect = 7.6
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 218 IPIFGFLFSCVLYVKIKHVI 237
+P+ G F+C++++ V+
Sbjct: 291 VPLLGTYFNCIMFMVASSVV 310
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.327 0.141 0.456
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,226
Number of Sequences: 429
Number of extensions: 2182
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 11
length of query: 238
length of database: 140,377
effective HSP length: 56
effective length of query: 182
effective length of database: 116,353
effective search space: 21176246
effective search space used: 21176246
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 43 (21.4 bits)
- SilkBase 1999-2023 -