GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001033-TA|BGIBMGA001033-PA|IPR000301|CD9/CD37/CD63
antigen, IPR008952|Tetraspanin
         (238 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11190.1 68414.m01282 bifunctional nuclease (BFN1) identical ...    29   2.8  
At4g00150.1 68417.m00015 scarecrow-like transcription factor 6 (...    28   4.8  
At4g20870.1 68417.m03027 fatty acid hydroxylase, putative simila...    28   6.4  
At3g16370.1 68416.m02071 GDSL-motif lipase/hydrolase family prot...    28   6.4  
At5g65860.1 68418.m08289 ankyrin repeat family protein contains ...    27   8.5  
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ...    27   8.5  

>At1g11190.1 68414.m01282 bifunctional nuclease (BFN1) identical to
           bifunctional nuclease bfn1 [Arabidopsis thaliana]
           gi|4099831|gb|AAD00693
          Length = 305

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 144 CCGAIRYEDWRKSRWHEHDPRLLVPDSCCKTRTQR-CGTRDHPSNIYYTGCIHHFTNHIR 202
           C    +   W K RW  H   +  PD  C     R C  +    ++   G I +FT+ ++
Sbjct: 69  CVWPDQIRHWYKYRWTSHLHYIDTPDQACSYEYSRDCHDQHGLKDMCVDGAIQNFTSQLQ 128


>At4g00150.1 68417.m00015 scarecrow-like transcription factor 6
           (SCL6)
          Length = 558

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 118 NSTFTTNYALDTAVTDAVDSMQTEFKCCGAIRYEDWRKSRWHEHDPRLL 166
           +ST ++++  ++AV    D+   E   CGAI   DW +   H+H+  +L
Sbjct: 65  SSTVSSSHGGNSAVGGGGDATTDEQ--CGAIGLGDWEEQVPHDHEQSIL 111


>At4g20870.1 68417.m03027 fatty acid hydroxylase, putative similar
          to fatty acid hydroxylase Fah1p GB:AF021804 GI:2736147
          from [Arabidopsis thaliana]
          Length = 237

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 43 LPTITYPAIGYLLVIAGSFGLPFAALG 69
          +PTI  P + Y+L I+ S GL F  +G
Sbjct: 58 IPTIWLPVVCYVLSISASKGLTFPQIG 84


>At3g16370.1 68416.m02071 GDSL-motif lipase/hydrolase family protein
           similar to family II lipases EXL3 GI:15054386, EXL1
           GI:15054382, EXL2 GI:15054384 from [Arabidopsis
           thaliana]; contains Pfam profile: PF00657 Lipase
           Acylhydrolase with GDSL-like motif
          Length = 353

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/22 (54%), Positives = 12/22 (54%)

Query: 62  GLPFAALGCCGLKTENRTSLLC 83
           G   A  GCCG  T   TSLLC
Sbjct: 289 GFTEATKGCCGTGTVETTSLLC 310


>At5g65860.1 68418.m08289 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 346

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 150 YEDWRKSRWHEHDPRLLVPDSCCKTRTQRCGT 181
           YED R+  +H+H PRLL PD         CG+
Sbjct: 256 YEDLRE--FHQHLPRLLKPDGVYSYFNGFCGS 285


>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
            transcription factor jumonji (jmj) family protein
            contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
            domain and PF00096: Zinc finger, C2H2 type
          Length = 1327

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 168  PDSCCKTRTQRCGTRDHPSNIYYTGC 193
            P +C  +R Q   T  HP+  Y  GC
Sbjct: 1197 PKACSGSRQQEVPTTTHPNRCYLEGC 1222


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.327    0.141    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,090,975
Number of Sequences: 28952
Number of extensions: 186803
Number of successful extensions: 455
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 6
length of query: 238
length of database: 12,070,560
effective HSP length: 79
effective length of query: 159
effective length of database: 9,783,352
effective search space: 1555552968
effective search space used: 1555552968
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)