Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001032-TA|BGIBMGA001032-PA|IPR001452|Src homology-3,
IPR001683|Phox-like
         (558 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   2.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   4.2  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 139 PGMPINDYNQHIDDTSSNYSSSVGTVRKNKFAPSSKISGESYLLATLNVEVPDS 192
           PG P + Y       S+ YSS + +   + ++P+ KI  E    ++LN    DS
Sbjct: 121 PGPPSHPYTV----ISNGYSSPMSSGSYDPYSPNGKIGREDLSPSSLNGYSADS 170


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 204 YIWSPITQPYIVTVASPKKESKFKGIKSFIAYQLTPSFNNIQVSRRYKHFDWLHER---L 260
           Y  +P+T P    + SPK E + K +++ +    +P+          +  +   E+    
Sbjct: 101 YNHNPLTPPNSEPLVSPKSEKEEKDMETTLTPCASPNRKPDDNQDHLRRLEMSLEKSGLF 160

Query: 261 QEKFTLIPIPPLPDKQISG--RYDEQLIERRRV----QLQEFVDWMCKHPVLSRSEVWQH 314
             K +   +  L  K  +    YDEQ +   +V    +++ F    C    +++ E W H
Sbjct: 161 SSKTSEHSVDELSGKSDNDAEEYDEQSLRVPKVNSHGKIKTFKCKQCDFVAITKLEQWNH 220


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.133    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,582
Number of Sequences: 317
Number of extensions: 5352
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 2
length of query: 558
length of database: 114,650
effective HSP length: 60
effective length of query: 498
effective length of database: 95,630
effective search space: 47623740
effective search space used: 47623740
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)