Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001032-TA|BGIBMGA001032-PA|IPR001452|Src homology-3,
IPR001683|Phox-like
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1430 - 37309737-37309946,37310049-37310100,37310348-373104... 73 5e-13
11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,284... 46 8e-05
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 39 0.009
05_03_0608 + 16153992-16154960,16158959-16159168,16159252-161595... 39 0.012
05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448... 36 0.085
07_03_1697 - 28795521-28797328,28797430-28797550 32 1.0
05_07_0267 + 28818396-28818513,28819292-28819697,28819796-288199... 32 1.4
08_02_1028 - 23752118-23752274,23753918-23754053,23754236-237551... 31 3.2
07_03_0542 - 19256688-19256804,19257181-19257255,19257337-192574... 31 3.2
02_04_0278 - 21507288-21507726,21507893-21507972,21508587-215088... 30 4.2
03_02_0481 + 8789890-8789949,8790325-8790441,8790532-8790601,879... 29 7.4
09_04_0373 - 17037945-17040641 29 9.7
07_03_0249 - 15816515-15816868,15817749-15817958,15818051-158182... 29 9.7
>01_06_1430 -
37309737-37309946,37310049-37310100,37310348-37310427,
37310538-37310606,37310710-37310843,37311173-37311332,
37311483-37311554,37312113-37312246,37312386-37312521,
37313273-37313416
Length = 396
Score = 73.3 bits (172), Expect = 5e-13
Identities = 97/375 (25%), Positives = 161/375 (42%), Gaps = 53/375 (14%)
Query: 212 PYI-VTVASPKKESKFKGIKSFIAYQLT-----PSFNNIQ--VSRRYKHFDWLHERLQEK 263
P++ ++V P K G++++I+Y++ P F + V RRY F+WLH+RL EK
Sbjct: 21 PFLSISVTDPVKMGT--GVQAYISYRVITKTNLPDFEGQEKIVIRRYSDFEWLHDRLAEK 78
Query: 264 FTLIPIPPLPDKQI--SGRYDEQLIERRRVQLQEFVDWMCKHPVLSRSEVWQHFLTCTDE 321
+ I IPPLP+K R+ ++ IE RR L FV+ + HP L +S + FL +E
Sbjct: 79 YKGIFIPPLPEKNAVEKFRFSKEFIELRRQALDLFVNRIASHPELKQSGDLKIFLQADEE 138
Query: 322 K-----RWKAGKRQAEKDNL---LGLNYCVSLVV--PEKALLQSQVDHITEQCHTFINSV 371
K ++ G + D L + VS VV EK + +S ++ E+ +I +
Sbjct: 139 KMDRERSYETGIFKKPSDFLQMFKDVQSKVSDVVLGKEKPVEESSPEY--EKLKNYIFEL 196
Query: 372 DTAIKSVSSMCIVQTKRFQGPYKSDCQKIGEAFYSLGNALSL---DEGTIVSTSKLTSAI 428
+ + KR +++G++ G A+ L EG S K+ S +
Sbjct: 197 ENHLAEAQKQAFRLVKRH--------RELGQSLADFGKAIKLLGACEGD--SLEKVFSEV 246
Query: 429 -KMTGGVYIDIGRMYDEQPKYDWEPLGDKFHLYKGIAASFPD---VLANHKGAVQKKR-- 482
+ + + + R D EPL D + I A+ D H Q+K
Sbjct: 247 GSKSEMLSVKLQREADNLLFNFEEPLKDYVRAVQSIKATMVDRANAFRQHHDLFQQKEYK 306
Query: 483 --ECERLTAENKMEVAQL--------NEVLRRTDVISYALLAEINHFKSERTVDIKATMQ 532
E+L N + ++L E +R + I + E+ F+ ++T DI
Sbjct: 307 GVNLEKLKFVNPDKFSELEAELTADSEEATKRFEHIVAVMNEELARFQEQKTADIGFAFH 366
Query: 533 KFLKQQINFYKKIVD 547
+F K Q K I D
Sbjct: 367 EFAKGQAKLAKDIAD 381
>11_01_0374 -
2843405-2843508,2844134-2844239,2844327-2844409,
2844886-2845078,2845527-2845662,2846185-2846264,
2846348-2846932,2847058-2847126,2847203-2847347,
2847442-2847542,2848208-2849066,2849397-2849536,
2849606-2849783,2849885-2850287,2850770-2850833,
2851223-2851278,2851470-2851572
Length = 1134
Score = 46.0 bits (104), Expect = 8e-05
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 11/123 (8%)
Query: 230 KSFIAYQL--TPSFNNIQ-VSRRYKHFDWLHERLQE--KFTLIPIPPLPDKQISGRYDEQ 284
KSF Y + T + N V RRY++F+ LH +L+E ++L +P P +S D+
Sbjct: 613 KSFAVYSIAVTDAENKAWFVKRRYRNFERLHRQLKEIPNYSL-HLP--PKSFLSSSIDDY 669
Query: 285 LIERRRVQLQEFVDWMCKHP-VLSRSEVWQHFLTCTDEKRWKAGKRQAEKDNLLGLNYCV 343
L+ +R + L +++ + P + + EVW FL+ T K + AGK + L G +
Sbjct: 670 LVHQRCILLDKYLQELLSIPNIAEQHEVWD-FLSAT-SKNYSAGKSTSVMKTLAGRILVL 727
Query: 344 SLV 346
SL+
Sbjct: 728 SLL 730
>01_06_1201 -
35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 39.1 bits (87), Expect = 0.009
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 14/117 (11%)
Query: 215 VTVASPKKESK--------FKGIKSFIAYQLTPSFNN---IQVSRRYKHFDWLHERLQEK 263
+TV+ PKK ++ G S+ +Y +T + +V RR++ L +RL
Sbjct: 157 ITVSEPKKHAEPAAGAAGVIPGSGSYFSYLITTRAADGGLFRVRRRFRDVVALADRLAAA 216
Query: 264 FTLIPIPPLPDKQI-SGRYDE--QLIERRRVQLQEFVDWMCKHPVLSRSEVWQHFLT 317
+ + +P PDK I G+ + + + +R LQ ++ + HP + RS FLT
Sbjct: 217 YRGLFVPARPDKSIVEGQVMQRHEFVNQRCAALQRYLGRLAAHPTIGRSAELHDFLT 273
>05_03_0608 +
16153992-16154960,16158959-16159168,16159252-16159512,
16160153-16160197,16160324-16160410,16160679-16160774
Length = 555
Score = 38.7 bits (86), Expect = 0.012
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 246 VSRRYKHFDWLHERLQEKFTLIPIPPLPDK---QISGRYDEQLIERRRVQLQEFVDWMCK 302
V RR++ F L +RL E F +PP PDK + ++ + +RR L+ ++ + +
Sbjct: 149 VRRRFRDFVTLADRLAEAFRGHFVPPRPDKNTVESQVMQRDEFVAQRRAALERYLWRLAE 208
Query: 303 HPVLSRSEVWQHFL 316
HP + S+ + FL
Sbjct: 209 HPAIGPSDELRVFL 222
>05_05_0195 +
23142830-23143714,23144288-23144314,23144657-23144866,
23144976-23145242,23146290-23146376,23146495-23146553,
23147166-23147768,23148063-23148192,23148570-23149100,
23149636-23149743,23149911-23150456,23150957-23151079,
23151494-23151709
Length = 1263
Score = 35.9 bits (79), Expect = 0.085
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 215 VTVASPKKESK--------FKGIKSFIAYQLTPSFNN--IQVSRRYKHFDWLHERLQEKF 264
+ V+ PKK ++ G S+ +Y +T ++V RR++ L +RL
Sbjct: 94 IAVSDPKKHAEPTSGAAGVIPGSGSYFSYLITTRVGEAEVRVRRRFRDVVALADRLAAAH 153
Query: 265 TLIPIPPLPDK-----QISGRYDEQLIERRRVQLQEFVDWMCKHPVLSRSEVWQHFLT 317
+ IP PDK Q+ R+D + +R LQ ++ + HPV+ S + FLT
Sbjct: 154 RGLFIPARPDKSVVEGQVMQRHD--FVNQRCSALQRYLRRLAAHPVVGHSPDLRTFLT 209
>07_03_1697 - 28795521-28797328,28797430-28797550
Length = 642
Score = 32.3 bits (70), Expect = 1.0
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 41 EGKKSNGETGLFPAAYVRKLTPEESIQTKAAPPAPRYDQAADD 83
EGKKS+ ET P V +L P S+QT + PAP + DD
Sbjct: 190 EGKKSSEETSQSPRRDVVELPPS-SVQTPDSQPAPAVLKREDD 231
>05_07_0267 +
28818396-28818513,28819292-28819697,28819796-28819973,
28820414-28820553,28820629-28821874,28821952-28822052,
28822170-28822314,28822755-28822823,28822910-28822955,
28823049-28823422,28823622-28823701,28823813-28823948,
28824199-28824358,28824582-28824664,28825417-28825545
Length = 1136
Score = 31.9 bits (69), Expect = 1.4
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 242 NNIQVSRRYKHFDWLHERLQEKFTLIPIPPLPDKQISGRYDEQLIERRRVQLQEFVDWMC 301
N+ + RR++HF+ LH RL+E ++ + P +S + ++ R L ++ +
Sbjct: 723 NSWSIKRRFRHFEELHRRLKE-YSQYNLHLPPKHFLSSGLEVPVVRERCKLLDIYLKKLL 781
Query: 302 KHPVLSRS-EVW 312
+ P +S EVW
Sbjct: 782 QIPTVSSCIEVW 793
>08_02_1028 -
23752118-23752274,23753918-23754053,23754236-23755195,
23755770-23756373
Length = 618
Score = 30.7 bits (66), Expect = 3.2
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 416 GTIVSTSKLTSAIKMTGGVYIDIGRMYDE----QPKYDWEPLGDKFHLYKGIAASFPDVL 471
G V S + +A M G V +M ++ QP + W + DK H++ G AS P++
Sbjct: 432 GAYVMLSNIYAAAGMWGEVNRVRSQMKEKGVKKQPGHSWTEIADKVHMFVGGDASHPEMD 491
Query: 472 ANHKGAVQKKRECERLTAENKMEVAQLNEVLRRTDVISYALLAEINHFKSERTVDIKATM 531
+ + +T + +M + E+++ D+ E H K E +++ AT
Sbjct: 492 MILSELRKISFHMQMVTDKTQM----MEELVQECDISLCKRRVETRHEK-EHILEVTAT- 545
Query: 532 QKFLKQQINFYK 543
F+ + Y+
Sbjct: 546 --FIDPNLGLYR 555
>07_03_0542 -
19256688-19256804,19257181-19257255,19257337-19257426,
19257506-19257568,19257659-19257856,19257973-19258074,
19259276-19259424,19260136-19260205,19260460-19260582,
19261541-19261600
Length = 348
Score = 30.7 bits (66), Expect = 3.2
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 6 QALYDFTGEPGTTEMSITCGEVLTLLNTEIGEGWWEGKKSNGETGLFPAAYVRK 59
+A+++F G E+S+ G+ + + GW EG+ G G FPAAYV +
Sbjct: 285 EAVHNFNGTT-EKELSLIVGDYVVVRQIA-PNGWAEGE-CKGVAGWFPAAYVER 335
>02_04_0278 -
21507288-21507726,21507893-21507972,21508587-21508840,
21508988-21509180
Length = 321
Score = 30.3 bits (65), Expect = 4.2
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 481 KRECERLTAENK---MEVAQLNEVLRRTDVISYALLAEINH 518
KR CERLT EN+ EVA+L L RT SY L ++H
Sbjct: 190 KRCCERLTRENRRLQREVAELRGTL-RTTTSSYPPLYGLHH 229
>03_02_0481 +
8789890-8789949,8790325-8790441,8790532-8790601,
8790688-8790836,8791520-8791621,8791692-8791892,
8792589-8792651,8792791-8793009,8793681-8793755,
8794003-8794101,8794521-8794691
Length = 441
Score = 29.5 bits (63), Expect = 7.4
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 19 EMSITCGEVLTLLNTEIGEGWWEGKKSNGETGLFPAAYVRK 59
E+SI+ G+ + + GW EG+ G+ G FP+AYV +
Sbjct: 339 ELSISVGDYVVVRQVA-PNGWSEGE-CKGKAGWFPSAYVEQ 377
>09_04_0373 - 17037945-17040641
Length = 898
Score = 29.1 bits (62), Expect = 9.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 136 IVIPGMPINDYNQHIDDTSSNYSSSVGT 163
IVIPGMP Q I +SN+++ VG+
Sbjct: 520 IVIPGMPARFSYQEITTMTSNFATKVGS 547
>07_03_0249 -
15816515-15816868,15817749-15817958,15818051-15818245,
15818318-15818393,15819982-15820021,15820155-15820283,
15820363-15820405
Length = 348
Score = 29.1 bits (62), Expect = 9.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 469 DVLANHKGAVQKKRECERLTAENKME 494
D LA HK A +K R+ ER+ E K E
Sbjct: 225 DFLAEHKAAKEKARDEERIAREKKAE 250
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.133 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,264,657
Number of Sequences: 37544
Number of extensions: 622380
Number of successful extensions: 1622
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1611
Number of HSP's gapped (non-prelim): 15
length of query: 558
length of database: 14,793,348
effective HSP length: 86
effective length of query: 472
effective length of database: 11,564,564
effective search space: 5458474208
effective search space used: 5458474208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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