GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001032-TA|BGIBMGA001032-PA|IPR001452|Src homology-3,
IPR001683|Phox-like
         (558 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    25   5.3  
EF519370-1|ABP68479.1|  452|Anopheles gambiae LRIM1 protein.           24   9.3  
EF519369-1|ABP68478.1|  506|Anopheles gambiae LRIM1 protein.           24   9.3  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            24   9.3  

>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 421 TSKLTSAIKMTGGVYIDIGRMYDEQPKYDWEPLGDK 456
           T+  T+  +  G  ++D    YD+QP+   EP+ +K
Sbjct: 46  TTSTTNTQQQNGQEFVDDYDSYDDQPEPSDEPVFEK 81


>EF519370-1|ABP68479.1|  452|Anopheles gambiae LRIM1 protein.
          Length = 452

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 268 PIPPLPDKQISGRYDEQLIERRRVQLQEFVDW-MCKH 303
           P+ PL  + I  RY+E  +E++  Q     DW M +H
Sbjct: 415 PLQPL--RAIVKRYEEMYVEQQSAQNNAIRDWDMYQH 449


>EF519369-1|ABP68478.1|  506|Anopheles gambiae LRIM1 protein.
          Length = 506

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 268 PIPPLPDKQISGRYDEQLIERRRVQLQEFVDW-MCKH 303
           P+ PL  + I  RY+E  +E++  Q     DW M +H
Sbjct: 430 PLQPL--RAIVKRYEEMYVEQQSAQNNAIRDWDMYQH 464


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 138  IPGMPINDYNQHIDDTSSNYSSSVGTVRKNKFAPSSKISGE 178
            +P +P N   QH  + S  +S+   + +  + APS++ + +
Sbjct: 1217 LPDVPNNQRRQHQPNISLTHSNVRNSYQLTRVAPSNRTNNQ 1257


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.316    0.133    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 546,425
Number of Sequences: 2123
Number of extensions: 21678
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 5
length of query: 558
length of database: 516,269
effective HSP length: 67
effective length of query: 491
effective length of database: 374,028
effective search space: 183647748
effective search space used: 183647748
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)