Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001032-TA|BGIBMGA001032-PA|IPR001452|Src homology-3,
IPR001683|Phox-like
(558 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g06140.1 68418.m00683 phox (PX) domain-containing protein sim... 70 5e-12
At5g07120.1 68418.m00812 phox (PX) domain-containing protein sim... 57 4e-08
At5g58440.1 68418.m07319 phox (PX) domain-containing protein sim... 55 1e-07
At2g15900.1 68415.m01822 phox (PX) domain-containing protein wea... 43 5e-04
At3g15920.1 68416.m02013 phox (PX) domain-containing protein wea... 37 0.031
At1g15240.1 68414.m01824 phox (PX) domain-containing protein wea... 36 0.093
At5g48330.1 68418.m05970 regulator of chromosome condensation (R... 31 2.0
At4g34660.1 68417.m04921 SH3 domain-containing protein 2 (SH3P2)... 30 3.5
At4g32160.1 68417.m04574 phox (PX) domain-containing protein con... 30 3.5
At2g25350.1 68415.m03032 phox (PX) domain-containing protein wea... 30 3.5
At1g31440.1 68414.m03850 SH3 domain-containing protein 1 (SH3P1)... 30 4.6
At3g07730.1 68416.m00933 expressed protein 29 6.1
At1g32010.1 68414.m03938 myosin heavy chain-related 29 8.1
>At5g06140.1 68418.m00683 phox (PX) domain-containing protein
similar to SP|O60749 Sorting nexin 2 {Homo sapiens};
contains Pfam profile PF00787: PX domain
Length = 402
Score = 69.7 bits (163), Expect = 5e-12
Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 12/125 (9%)
Query: 207 SPITQPYI-VTVASPKKESKFKGIKSFIAYQLT-----PSFNNIQ--VSRRYKHFDWLHE 258
SP + PY+ V+V P K G++++I+Y++ P + + V RRY F WL +
Sbjct: 19 SPSSHPYLSVSVTDPVKLGN--GVQAYISYRVITKTNLPEYQGPEKIVIRRYSDFVWLRD 76
Query: 259 RLQEKFTLIPIPPLPDKQI--SGRYDEQLIERRRVQLQEFVDWMCKHPVLSRSEVWQHFL 316
RL EK+ I IPPLP+K R+ + IE RR L FV+ + HP L +SE + FL
Sbjct: 77 RLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRAALDIFVNRIALHPELQQSEDLRTFL 136
Query: 317 TCTDE 321
+E
Sbjct: 137 QADEE 141
>At5g07120.1 68418.m00812 phox (PX) domain-containing protein
similar to SP|O60749 Sorting nexin 2 {Homo sapiens};
contains Pfam profile PF00787: PX domain
Length = 572
Score = 56.8 bits (131), Expect = 4e-08
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 16/126 (12%)
Query: 207 SPITQPYI-VTVASPKKE-----SKFKGIKSFIAYQLTPSFN-------NIQVSRRYKHF 253
S ++ YI +TV++P+KE S G ++I YQ+T N V RR++
Sbjct: 135 SSLSSDYIKITVSNPQKEQEATNSMIPGGSTYITYQITTRTNLSDYGGSEFSVRRRFRDI 194
Query: 254 DWLHERLQEKFTLIPIPPLPDKQI---SGRYDEQLIERRRVQLQEFVDWMCKHPVLSRSE 310
L +RL E + IPP PDK I ++ +E+RRV L++++ + HPV+ S+
Sbjct: 195 VTLADRLAESYRGFCIPPRPDKSIVESQVMQKQEFVEQRRVALEKYLRRLVAHPVIRNSD 254
Query: 311 VWQHFL 316
+ FL
Sbjct: 255 ELKVFL 260
>At5g58440.1 68418.m07319 phox (PX) domain-containing protein
similar to SP|O60749 Sorting nexin 2 {Homo sapiens};
contains Pfam profile PF00787: PX domain
Length = 587
Score = 54.8 bits (126), Expect = 1e-07
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 16/126 (12%)
Query: 207 SPITQPYI-VTVASPKKESKFK----GIKSFIAYQLT-----PSF---NNIQVSRRYKHF 253
S + YI +TV++P+KE + G ++I YQ+T P F + V RR++
Sbjct: 146 SSSSSDYIKITVSNPQKEQEISNSIVGGNTYITYQITTRTNLPDFGGPSEFSVRRRFRDV 205
Query: 254 DWLHERLQEKFTLIPIPPLPDKQI---SGRYDEQLIERRRVQLQEFVDWMCKHPVLSRSE 310
L +RL E + IPP PDK + ++ +E+RRV L++++ + HPV+ S+
Sbjct: 206 VTLADRLAETYRGFCIPPRPDKSVVESQVMQKQEFVEQRRVALEKYLRRLSAHPVIRNSD 265
Query: 311 VWQHFL 316
+ FL
Sbjct: 266 ELKVFL 271
>At2g15900.1 68415.m01822 phox (PX) domain-containing protein weak
similarity to SP|Q9Y5W8 Sorting nexin 13 {Homo sapiens};
contains Pfam profiles PF00787: PX domain, PF02194: PXA
domain
Length = 1009
Score = 43.2 bits (97), Expect = 5e-04
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 13/109 (11%)
Query: 227 KGIKSFIAYQL--TPSFNNIQ-VSRRYKHFDWLHERLQE--KFTLIPIPPLPDKQI-SGR 280
+G KSF Y + T N V RRY +F+ LH +L+E + L LP K+I S
Sbjct: 540 QGSKSFAVYSIAVTDVENKTWFVKRRYSNFERLHRQLKEIPNYNL----QLPPKRIFSSS 595
Query: 281 YDEQLIERRRVQLQEFV-DWMCKHPVLSRSEVWQHFLTCTDEKRWKAGK 328
++ + RR +QL +++ D +C V + EVW FL+ K + GK
Sbjct: 596 TEDAFVHRRCIQLDKYLQDLLCIANVAEQHEVWD-FLSAA-SKNYSFGK 642
>At3g15920.1 68416.m02013 phox (PX) domain-containing protein weak
similarity to myosin heavy chain [Rana catesbeiana]
GI:4249699; contains Pfam profile PF00787: PX domain
Length = 755
Score = 37.1 bits (82), Expect = 0.031
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 246 VSRRYKHFDWLHERLQEKFTLIPIPPLPDKQISGRYDEQLIERRRVQLQEFVDWMCKHPV 305
V RR+ F L+ ++++F +P P K+I ++ L+E RR L+++++ +
Sbjct: 147 VLRRFNDFLELYSSIKKEFVKKSLPQAPPKKILRMRNQTLLEERRCSLEDWMNRLLSDID 206
Query: 306 LSRSEVWQHFL 316
+SRS + FL
Sbjct: 207 ISRSALIATFL 217
>At1g15240.1 68414.m01824 phox (PX) domain-containing protein weak
similarity to SP|Q9Y5W8 Sorting nexin 13 {Homo sapiens};
contains Pfam profiles PF00787: PX domain, PF02194: PXA
domain
Length = 706
Score = 35.5 bits (78), Expect = 0.093
Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 10/149 (6%)
Query: 149 HIDDTSSNYSSSVGTVRKNKFAPSSKISGESYLLATLNVEVPDSEKVYIIQDEDGYIWSP 208
HI D + S G++ ++ ++ S S SY+ A + ++P++ K ++ D +
Sbjct: 559 HIIDDDDSDDSEDGSLTRS-YSGMSATSSTSYVSAAES-DLPNAPKSSLLVDSFAKLRCE 616
Query: 209 ITQPYIVTVASPKKESKFKGIKSFIAYQLTPSFNNIQVSRRYKHFDWLHERLQEKFTLIP 268
+ IV K SK + S S ++ + RR++HF+ LH RL + F
Sbjct: 617 VLGANIV-----KGSSKMFAVYSVAVTD--ESNHSWSIKRRFRHFEELHRRL-KVFPEYK 668
Query: 269 IPPLPDKQISGRYDEQLIERRRVQLQEFV 297
+ P +S D +I+ R V L E++
Sbjct: 669 LHLPPKHFLSTGVDIPVIQERCVLLDEYI 697
>At5g48330.1 68418.m05970 regulator of chromosome condensation
(RCC1) family protein contains Pfam PF00415:Regulator of
chromosome condensation (RCC1) domain (5 copies);
similar to UVB-resistance protein UVR8 (GI:5478530)
{Arabidopsis thaliana)
Length = 455
Score = 31.1 bits (67), Expect = 2.0
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 13 GEPGTTEMSITCGEVLTLLNTEIGEGWWEGKKSNGETGL 51
G G + S++ G V +L TE GE W G NG GL
Sbjct: 382 GFDGESPASVSAGRVHSLCVTEKGEAWVWGCGKNGRLGL 420
>At4g34660.1 68417.m04921 SH3 domain-containing protein 2 (SH3P2)
nearly identical to SH3 domain-containing protein 2
[Arabidopsis thaliana] GI:16974678; contains Pfam
profile PF00018: SH3 domain
Length = 368
Score = 30.3 bits (65), Expect = 3.5
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 19 EMSITCGEVLTLLNTEIGEGWWEGKKSNGETGLFPAAYVRK 59
E+S++ GE + + G GW EG+ G+ G FP Y+ +
Sbjct: 317 ELSLSTGEYVVVRKVT-GSGWAEGE-CKGKAGWFPYGYIER 355
>At4g32160.1 68417.m04574 phox (PX) domain-containing protein
contains Pfam profile PF00787: PX domain
Length = 723
Score = 30.3 bits (65), Expect = 3.5
Identities = 21/71 (29%), Positives = 31/71 (43%)
Query: 246 VSRRYKHFDWLHERLQEKFTLIPIPPLPDKQISGRYDEQLIERRRVQLQEFVDWMCKHPV 305
V RR+ F L L+ F P P K + ++E RR L+E++ +
Sbjct: 88 VLRRFNDFLKLLTDLKRTFPRKGFPSAPPKGLLRMKSRAVLEERRCSLEEWITKLLSDIE 147
Query: 306 LSRSEVWQHFL 316
L+RS V FL
Sbjct: 148 LARSVVVASFL 158
>At2g25350.1 68415.m03032 phox (PX) domain-containing protein weak
similarity to SP|Q9UTK5 Abnormal long morphology protein
1 (Sp8) {Schizosaccharomyces pombe}; contains Pfam
profile PF00787: PX domain
Length = 643
Score = 30.3 bits (65), Expect = 3.5
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 213 YIVTVASPKKESKFKGIKSFIAYQLTPSFNNIQ-------VSRRYKHFDWLHERLQEKFT 265
Y VT+ S SK K + Y++ S + + + RR+ F L L+ F
Sbjct: 47 YCVTIPSWTLLSKSKNSDPIVFYRVQVSVQSPEGVSTMRGILRRFNDFVKLLADLKRAFP 106
Query: 266 LIPIPPLPDKQISGRYDEQLIERRRVQLQEFVDWMCKHPVLSRSEVWQHFL 316
P P K ++E RR L++++ + L+RS V FL
Sbjct: 107 RKSFPSAPPKGFLRVKSRDMLEERRCSLEDWMTKLLSDIELARSVVVASFL 157
>At1g31440.1 68414.m03850 SH3 domain-containing protein 1 (SH3P1)
nearly identical to SH3 domain-containing protein 1
[Arabidopsis thaliana] GI:16974676; contains Pfam
profile PF00018: SH3 domain
Length = 439
Score = 29.9 bits (64), Expect = 4.6
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 19 EMSITCGEVLTLLNTEIGEGWWEGKKSNGETGLFPAAYVRK 59
E+S+ + + ++ G GW EG+ G+ G FP+AYV K
Sbjct: 384 ELSLAVDDYV-IVRQVAGTGWSEGEYK-GKAGWFPSAYVEK 422
>At3g07730.1 68416.m00933 expressed protein
Length = 473
Score = 29.5 bits (63), Expect = 6.1
Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 482 RECERLTAENKMEVAQLNEVLRRTDVISYAL---LAEINHFKSERTVDIKATMQKFLKQQ 538
++ +R T ++E ++ E+++R + ++ +AE+ K+ R V T Q+ ++Q+
Sbjct: 101 QQSKRKTVGVEVERVKIREIIQRDNRVAERRKRRIAELEAAKTSRDVPSLETQQEDIQQR 160
Query: 539 INFYKKIVDKLETTLRYYD 557
N +K+ + TLR D
Sbjct: 161 DNKVRKLSESKAETLRRDD 179
>At1g32010.1 68414.m03938 myosin heavy chain-related
Length = 835
Score = 29.1 bits (62), Expect = 8.1
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 481 KRECERLTAENKMEVAQLNEVLRRTDVISYALLAEINHFKSERTVDIKATMQKFLKQQIN 540
K++ L AE E A L VLR+ ++ L E F+ R M+K + +N
Sbjct: 592 KKKIVVLKAERSKEAATLENVLRQQTLLEARLAEEKEIFRRFREEKFAEDMEKTRAELLN 651
Query: 541 FYKKIVDKL 549
Y + +K+
Sbjct: 652 KYYERSEKI 660
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.133 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,652,474
Number of Sequences: 28952
Number of extensions: 522685
Number of successful extensions: 1364
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1354
Number of HSP's gapped (non-prelim): 13
length of query: 558
length of database: 12,070,560
effective HSP length: 85
effective length of query: 473
effective length of database: 9,609,640
effective search space: 4545359720
effective search space used: 4545359720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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