Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001031-TA|BGIBMGA001031-PA|IPR001978|Troponin
(332 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 39 0.001
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 31 0.23
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 31 0.23
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 31 0.30
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 30 0.40
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 29 0.92
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.92
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 29 1.2
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 1.2
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 28 1.6
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 2.1
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 27 2.8
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 27 3.7
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 6.5
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 26 6.5
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 6.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 8.6
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 26 8.6
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 26 8.6
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 38.7 bits (86), Expect = 0.001
Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 24 EHEVRKRDYEISDLNSQVNDL--RGKFVKPTLKKVSKYENKFAKLQKKAAEFN--FRNQL 79
E+E+ KR+ + +N + +DL R K ++ L KV ++E + K +E N F N+
Sbjct: 216 ENEINKRELK---MNGKEDDLKKREKDLENRLLKVEEHEKSLNERATKLSEANENFNNRF 272
Query: 80 KVVKKKEFTLEEEDKEKKPDWSK--GKPGDQKRLIEAFLEDFLMIAVTSFLL 129
K +++E + +++KE+ + SK + +QK LI + + IA+ LL
Sbjct: 273 KEFEEREKSAIKQNKEQSSEGSKTANQTHEQKELINSLEKKVSDIALEKQLL 324
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 31.1 bits (67), Expect = 0.23
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 24 EHEVRKRDYEISDLNSQVNDLRGKF--VKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKV 81
+ EV K EI+ L+ + ND +F ++ L+ + + NK AK + N QLK+
Sbjct: 598 KEEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNK-AKEDSTSKTSNLLEQLKM 656
Query: 82 VKKKEFTLEEEDKEKK 97
+ + +L +E++E K
Sbjct: 657 TEAEVDSLRKENEENK 672
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 31.1 bits (67), Expect = 0.23
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 60 ENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKRLIE 113
+N F K E NF + +K K +FT E+K + K P +QK+ I+
Sbjct: 254 DNFFRDFLKVCDECNFNHNIKEFSKCDFTQMFHHFEQKREEKKSMPKEQKKAIK 307
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 30.7 bits (66), Expect = 0.30
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 22 DLEHEVRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEF---NFRNQ 78
+L V++R + L + +DL +F K + Y K+A + K+ +E
Sbjct: 70 ELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVVRGADEPT 129
Query: 79 LKVVKKKEFTLEEEDKEKKPDWSKGKPG--DQKRLIEAFL 116
+ +KK E E E KE SK + G D K + E +L
Sbjct: 130 EEEIKKGEAADENEKKEPTSSESKKQEGGDDTKGIPEFWL 169
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 30.3 bits (65), Expect = 0.40
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 51 PTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDW 100
PT KK + ++ K + ++ +E N + VK + L+ ++EK P W
Sbjct: 531 PTAKKNNSFKPKLFRRSRELSEKLCNNWSERVKSPSYQLKVREREKLPAW 580
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 29.1 bits (62), Expect = 0.92
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 74 NFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQ 108
+FRNQ+K ++ L E+ KE W +G DQ
Sbjct: 1070 DFRNQIKSQTERILVLREKKKEDPISWMEGTMEDQ 1104
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.1 bits (62), Expect = 0.92
Identities = 22/84 (26%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 18 GQKWDLEHEVRKRDYEISDLNSQVNDLRGKFVKPT--LKKVSKYENKFAKLQKKAAEFNF 75
G+ +LE EV K + ++ L +++N+L+ + T L + +Y +++ KL+ ++ +
Sbjct: 1288 GKIQELEKEVEKLNASLNPLQTEINELKAEIGAKTASLNLMKEYNSRW-KLRFQSVLNKY 1346
Query: 76 R----NQLKVVKKKEFTLEEEDKE 95
QL+ +KK LE+E +E
Sbjct: 1347 ERVDPTQLEELKKNCEALEKEKQE 1370
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 68 KKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKRLIEAFLEDFLMI 122
KK + R +++ K ++DK KP+ GKP D+ F D++ +
Sbjct: 22 KKPLPLHMRTKIREHLNKSDPTVKDDKSAKPELPFGKPADRVPFWHIFKGDYVYV 76
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/83 (20%), Positives = 36/83 (43%)
Query: 20 KWDLEHEVRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQL 79
+W +H++ + D N + L +F ++ V + + K ++KA + +
Sbjct: 575 EWARKHKIPEPQLPNIDYNDRPRRLIVEFAIENIQVVKRRQEKEKSFRQKAKQLKQQEDE 634
Query: 80 KVVKKKEFTLEEEDKEKKPDWSK 102
+K+K + ED E K +K
Sbjct: 635 DNLKRKRSESDVEDNEAKEKQAK 657
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/85 (20%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 9 YYDRM-YVCEGQKWDLEHEVRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQ 67
YY ++ Y C + W++ ++ + +Y SD + +F K T+ V+ Y F +
Sbjct: 541 YYKKLKYACTPKSWNISDDLGQVEYIFSDKTGTLTQNVMEFKKCTINGVA-YGEAFTEAM 599
Query: 68 KKAAEFNFRNQLKVVKKKEFTLEEE 92
A+ ++ ++ +K+ +E +
Sbjct: 600 AGMAKREGKDTEELTLQKQSFIERD 624
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 40 QVNDLRGKFVKPTLKKVSK-YENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKP 98
Q N +RG+ + + K+ K Y+N+ ++K + +++ + + + P
Sbjct: 418 QGNFVRGQKLHLEISKIQKKYQNQIENMKKGSHVTKSNQYSEMIGNLPYPTSSRKRTRSP 477
Query: 99 DWSKGKPGDQK 109
SKGK D+K
Sbjct: 478 LMSKGKSYDRK 488
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 56 VSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEE-DKEKK 97
+ K +NK + Q+ + +N+ K+ ++KE EEE D EKK
Sbjct: 1 MGKIKNKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKK 43
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 27.1 bits (57), Expect = 3.7
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 11 DRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKA 70
D VCE E + KR S S+ G + P KK+ K K K KK
Sbjct: 149 DEDRVCEDASSSDEAKREKRKKHSSKKKSKKKTSTGSALDP--KKLEKITKKKKKEHKKK 206
Query: 71 AEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKP 105
+ + K+K + ++E+K+KK K KP
Sbjct: 207 DK-----ESSSKKRKSGSSDKEEKKKKKIKLKDKP 236
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 6.5
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 53 LKKVSKYENKFAKLQKKAAEFNFRNQLKVVKK--KEFTLEEEDKEKKPDWSKGKPGDQKR 110
LK + + K QKK + N +K K K T+ +D +KPDW + D
Sbjct: 119 LKLLDSELKSWLKAQKKRSVPNGTQLVKNYNKISKPETVPPDDDPEKPDWIHFEQDDHVD 178
Query: 111 LI---EAFL 116
+I EAFL
Sbjct: 179 VICGKEAFL 187
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 55 KVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKRLIEA 114
K S++E + + AAE + + ++KE + + ++ K+PD + K G+ K L++
Sbjct: 17 KNSRFEELQREADEAAAEIEKMQKTSLDERKELSSKTKEFRKQPD--EVKLGEMKGLLKL 74
Query: 115 F 115
+
Sbjct: 75 Y 75
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.2 bits (55), Expect = 6.5
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 25 HEVRKRDY-----EISDLNSQVNDLRGKFVKPTLKKVS-KYENKFAKLQKKAAEFNFRNQ 78
+E KRDY E +L QVN+L+G V P S ++ N ++ KA ++Q
Sbjct: 1414 YENLKRDYDRLNLEKHNLEKQVNELKGAEVSPQPTGQSLQHVNLAHAIELKA----LKDQ 1469
Query: 79 LKVVKKKEFTLEEEDKEKKPDWSK 102
+ K K F+++ + ++++ + K
Sbjct: 1470 INSEKAKMFSVQVQYEKREQELQK 1493
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 8.6
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 46 GKFVKPTLKK-VSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGK 104
G+ + P L + + +E++F Q+ AE+ + Q + + + TLE + + W +G
Sbjct: 1385 GEHLIPNLYRYIQPWESEFIDSQRVWAEYAMKRQEALQQNRRLTLE----DLEDSWDRGI 1440
Query: 105 P 105
P
Sbjct: 1441 P 1441
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 25.8 bits (54), Expect = 8.6
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 34 ISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEED 93
+SD S+ +G F L++ + + + QK+ N R L V + + +EEE
Sbjct: 6 LSDRRSRFKS-KGVFKADELRRQREEQQIEIRKQKREESLNKRRNLNAVLQNDIDVEEEA 64
Query: 94 KEKKPDWSKGKPGDQKRLIEAFLEDFLMI---AVTSF 127
+ + + + +L + D + + AVT F
Sbjct: 65 DQSQVQMEQQMKDEFPKLTADVMSDDIELQLGAVTKF 101
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/43 (23%), Positives = 26/43 (60%)
Query: 2 LKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDL 44
+KR + +Y +++ + + LE ++++ + EISD +++ L
Sbjct: 850 VKRSLLKYENKLQIIKSSSSGLEEQMQRINSEISDKRNELESL 892
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.135 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,024,289
Number of Sequences: 5004
Number of extensions: 34378
Number of successful extensions: 157
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 149
Number of HSP's gapped (non-prelim): 19
length of query: 332
length of database: 2,362,478
effective HSP length: 73
effective length of query: 259
effective length of database: 1,997,186
effective search space: 517271174
effective search space used: 517271174
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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