Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001031-TA|BGIBMGA001031-PA|IPR001978|Troponin
(332 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0463 + 3502708-3503535 34 0.18
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 32 0.56
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 31 0.98
12_02_0426 - 18959301-18959396,18959593-18959727,18959821-189599... 31 1.7
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 31 1.7
04_01_0277 + 3681869-3681922,3681946-3682004,3683011-3683631,368... 31 1.7
01_03_0003 + 11509530-11512772 31 1.7
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 30 2.3
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 30 2.3
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 30 3.0
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 29 3.9
08_02_1368 + 26440962-26441108,26441293-26441379,26441468-264415... 29 6.9
09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158... 28 9.1
04_04_0476 - 25508952-25509004,25509245-25509326,25509453-255096... 28 9.1
03_01_0027 - 250837-250877,250972-252909,253733-253805,254476-25... 28 9.1
>07_01_0463 + 3502708-3503535
Length = 275
Score = 33.9 bits (74), Expect = 0.18
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 17 EGQKWDLEHEVRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFNFR 76
E +K ++E EV+ + + ++ +D VK K K ENK K KK E +
Sbjct: 42 EDEKKEIEIEVKAKIVDKEEVKLDSDDGAKSAVKSKDSKKDK-ENK--KSDKKDDEHDDE 98
Query: 77 NQLKVVKKKEFTLEEEDK-EKKPDWSKGKPGDQK 109
++ K+KE +++DK +KK + K K GD++
Sbjct: 99 DEEGKKKEKEMKEKKKDKSDKKEEGKKKKDGDEE 132
Score = 29.9 bits (64), Expect = 3.0
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 22 DLEHEVRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKV 81
D + E +K++ E+ + +D + + KK E + K +KK + + K
Sbjct: 97 DEDEEGKKKEKEMKEKKKDKSDKK----EEGKKKKDGDEEEGKKKEKKKDKDGDEKEGKK 152
Query: 82 VKKKEFTLEEEDKEKKPDWSKGKPGDQKR 110
KKK+ +EE++ KK + K GD+++
Sbjct: 153 EKKKDKDGDEEEEGKKKEKKKKDKGDKEK 181
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 32.3 bits (70), Expect = 0.56
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 23 LEHEVRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAE 72
LE +VRKR + ++ SQ +DL KF + +KY+ + L K E
Sbjct: 53 LEPKVRKRVEVLREIQSQHDDLEAKFFEERAALEAKYQKMYEPLYSKRYE 102
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 31.5 bits (68), Expect = 0.98
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 49 VKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQ 108
+K LK+ + + ++K E R + K K+KE +E DKEK+ + KGK +
Sbjct: 732 LKERLKEKERLREEEKARKEKEREEKERRKEKEKKEKERKEKERDKEKEREKDKGKDRSR 791
Query: 109 K 109
K
Sbjct: 792 K 792
>12_02_0426 -
18959301-18959396,18959593-18959727,18959821-18959910,
18960760-18960821,18961186-18961510
Length = 235
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 59 YENKFAKLQKKAAEFNFRNQLKVVKKKEFT-LEEEDKEKKPDWSKGKPGDQKRLIEAFLE 117
YE K +L K E N+ + K+ FT L E++ + DWS + G +R + F
Sbjct: 134 YEKKCEELNSKGLEEEEINKEHDLLKESFTILWTEEERRLYDWSLARSGKPERYVWPFEV 193
Query: 118 DFLMIA 123
D + +A
Sbjct: 194 DPMELA 199
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 30.7 bits (66), Expect = 1.7
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 2 LKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYEN 61
LK + E+ ++ E + DLE E++ E + +V++L G+ + K+ S E
Sbjct: 816 LKSHLTEFESKLASAEKKSMDLEQELKDATEECNSSRLRVDELSGELEEYKEKRTS-LEA 874
Query: 62 KFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKE 95
+ ++K AE + +L V +++ EE K+
Sbjct: 875 SLLEAKQKEAELS--EKLDQVNEEKEKFEELSKK 906
>04_01_0277 +
3681869-3681922,3681946-3682004,3683011-3683631,
3683718-3684147
Length = 387
Score = 30.7 bits (66), Expect = 1.7
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 19 QKWDLEHEVRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQ 78
+K +LEH V Y+ L+++ +DL+ + K + VS Y K + L+ K E +N
Sbjct: 59 EKRNLEHRVGNLVYQNISLSNEKDDLKNQLEKKR-RAVSVYLGKVSTLEYKVQELENQNT 117
Query: 79 L---KVVKKKE 86
++VK++E
Sbjct: 118 KLSGELVKQRE 128
>01_03_0003 + 11509530-11512772
Length = 1080
Score = 30.7 bits (66), Expect = 1.7
Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
Query: 2 LKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISD-LNSQVNDLRGKFVKPTLKKVSKYE 60
L+ II E + E + EH KR +E+ D +NS V+D L K+SK
Sbjct: 81 LEDIIDELSYKTVQPEAETNTHEHADLKRKFEVLDTVNSPVHDHEESLDTDMLDKISKVR 140
Query: 61 NKFAKLQKKAAEFNFR-NQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKRLIEAFLED 118
N+ + + R ++ + + G+ G++ +L+++ L +
Sbjct: 141 NRLKSINSFRESLSLREGDGRIRVSTTSNMRASSSLASETGTFGRDGEKNKLLDSLLNN 199
>12_02_1286 -
27555143-27555191,27555290-27555511,27555911-27556162,
27556683-27557062,27557202-27557311,27557864-27558033,
27558236-27558444,27558528-27558617,27559125-27559264,
27559356-27559463,27559626-27559716,27560736-27560852,
27561497-27561767,27561892-27562193,27562400-27562469,
27563464-27563702,27564613-27564846,27564943-27565179,
27565276-27565734
Length = 1249
Score = 30.3 bits (65), Expect = 2.3
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 3 KRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDLRGKFVKPTLKKVS-KYEN 61
K I+E DR+ E K +LE + K++ E+ L ++N++ + K K V K
Sbjct: 770 KSNIEEEIDRL---EPVKEELETRIGKKEREVRVLEKKINEIVDRIYKDFSKSVGVKNIR 826
Query: 62 KFAKLQKKAAEFNFRNQLKV---VKKKEFTLEEEDK 94
++ + Q K A+ +L + + K ++ LE E K
Sbjct: 827 EYEERQLKDAQALQERKLSLSNQMSKLKYQLEYEQK 862
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 30.3 bits (65), Expect = 2.3
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 5 IIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYENKFA 64
+IQE D + + K +L++E++ IS LN++ D + ++++VS E++
Sbjct: 409 LIQELRDEINSLKDSKNELQNEIQSLRSTISQLNTE-KDATLFQHQQSVERVSDLESQLL 467
Query: 65 KLQKKAAEFNFRNQL 79
KLQ + E + Q+
Sbjct: 468 KLQPELEEIEQKVQM 482
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 29.9 bits (64), Expect = 3.0
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 17 EGQKWDLEHEVRKRDYEISDLNSQVN-DLRGKFV---KPTLKKVSKYENKFAKLQKK 69
E + LEH ++KRD EIS LN++++ R +F+ +P ++ + +EN + LQ K
Sbjct: 1005 ESNQQSLEH-LKKRDLEISRLNNELDVHRRQEFLAMEEPKVQLLKCFENDDSPLQTK 1060
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 27 VRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKE 86
VRKR + ++ SQ ++L KF++ + Y+ + L K +E + V + E
Sbjct: 40 VRKRVDVLIEIQSQHDELEAKFLEEKAALEANYQKLYGPLYSKRSEI-----VSGVLEVE 94
Query: 87 FTLEEEDKEKKPD-WSKGKPGDQ 108
EE +++ PD W K ++
Sbjct: 95 GETEEREEKGVPDFWLKAMKNNE 117
>08_02_1368 +
26440962-26441108,26441293-26441379,26441468-26441560,
26441755-26442000,26442097-26442315,26442653-26442808,
26442893-26443052,26443148-26443299,26443375-26443462,
26443533-26443588,26444952-26445026,26445184-26445270
Length = 521
Score = 28.7 bits (61), Expect = 6.9
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 3 KRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDLRGKFVKPTLKKV-SKYEN 61
K I+ + M C+ ++W E+ +R Y IS + + R + + + K+ E
Sbjct: 396 KEIMDKVEKWMASCDEERWLEEYSRDERRYSISR-GAHKHLKRAERARIIVNKIPGLVEL 454
Query: 62 KFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGK 104
AK + E L ++K TL+E+++EK WS K
Sbjct: 455 LMAKTEIWEQEREKLPLLAMLKDYMLTLKEKEEEKYRQWSSIK 497
>09_01_0102 +
1582793-1582898,1582988-1583093,1584115-1584172,
1584676-1584745,1585132-1585197,1586374-1586429,
1587992-1588078,1588819-1589139,1589827-1589946,
1590747-1590881,1591529-1591605,1591681-1591756,
1592800-1592874,1592971-1593075,1593299-1593374,
1594482-1594617,1594702-1594804,1595186-1595298,
1596907-1597111,1597173-1597301,1597403-1597517,
1597710-1597795,1599108-1599203,1599615-1599751,
1600374-1600476,1601809-1601888,1602013-1602091,
1602241-1602298,1602489-1602586,1602673-1602767,
1602861-1602918
Length = 1074
Score = 28.3 bits (60), Expect = 9.1
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 27 VRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKK 69
++ + + L Q++D R ++++ T + SK EN ++QK+
Sbjct: 349 LKNMNNRVKQLQKQIHDFREQYIQYTQDESSKAENDKCEIQKE 391
>04_04_0476 -
25508952-25509004,25509245-25509326,25509453-25509611,
25509702-25509767,25509898-25510067,25510172-25510262,
25510331-25510410,25510887-25511003,25511092-25511218,
25511685-25511865,25511978-25512366,25512959-25513135,
25513306-25513500,25513844-25514031,25514192-25514500,
25514592-25514637
Length = 809
Score = 28.3 bits (60), Expect = 9.1
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 29 KRDYEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFT 88
+ D D NS+ + LR + PT ++++K + K+AA+F + +V
Sbjct: 217 REDESTQDENSRESPLRALILTPT-RELAK---QVCDHLKEAAKFLRIQVVPIVGGLSME 272
Query: 89 LEEEDKEKKPDWSKGKPGDQKRLIEAFLEDFLMIAVTSFLLGDRKD 134
+E ++KP+ G PG L+ + + + SF + D D
Sbjct: 273 KQERLLKRKPEIVVGTPGRLWELMSTGNQHLIKLHSLSFFVLDEAD 318
>03_01_0027 -
250837-250877,250972-252909,253733-253805,254476-254555,
255336-255595,255721-255785,256747-256839
Length = 849
Score = 28.3 bits (60), Expect = 9.1
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 5 IIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYENKFA 64
+IQE D + + +L++E++ IS LN++ D + ++++VS E++
Sbjct: 629 LIQELRDEINSLTDSRNELQNEIQSLRSTISQLNTE-KDAALFQHQQSVERVSDLESQLL 687
Query: 65 KLQKKAAEFNFRNQL 79
KLQ + E + Q+
Sbjct: 688 KLQPELEEIEQKVQM 702
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.135 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,076,725
Number of Sequences: 37544
Number of extensions: 181305
Number of successful extensions: 676
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 660
Number of HSP's gapped (non-prelim): 24
length of query: 332
length of database: 14,793,348
effective HSP length: 82
effective length of query: 250
effective length of database: 11,714,740
effective search space: 2928685000
effective search space used: 2928685000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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