GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001030-TA|BGIBMGA001030-PA|IPR001978|Troponin
         (130 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    27   0.71 
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    24   6.6  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    24   6.6  
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos...    24   8.7  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    24   8.7  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    24   8.7  

>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.5 bits (58), Expect = 0.71
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 86  KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKD 125
           +NI D++ED I ++   Y +  A   DE+   E+ +  KD
Sbjct: 435 ENIVDSSEDIINQIASQYMDDRAFETDEEESTEFQITTKD 474


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 24.2 bits (50), Expect = 6.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 8   AKAKKAKQAEIDRKRAEVRKRMEEAS 33
           AKAK +KQ  +D  +A+ +K + E S
Sbjct: 199 AKAKNSKQKTVDSGKAKEQKIVSEQS 224


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 24.2 bits (50), Expect = 6.6
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 7   YAKAKKAKQAEIDRKRAEV-RKRMEEA 32
           YAKAK    AE +R+R E+  +++ EA
Sbjct: 763 YAKAKNVIDAERERQRKEIFEQKLAEA 789


>SPBC13G1.03c |pex14||peroxisomal membrane anchor
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 23.8 bits (49), Expect = 8.7
 Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 88  IDDANE--DTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEVVR 130
           +DD  E  +T+KR  ++    IAR+  + + +  I   + +E ++
Sbjct: 149 LDDLEETLNTLKRTSENRDREIARISQDVYTMSTITLPQSLEQIK 193


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 23.8 bits (49), Expect = 8.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 92  NEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDME 127
           N++ IK   + Y ERI   ED+   L+ ++   + E
Sbjct: 87  NDNDIKNFIRSYAERIVNNEDKNVFLDSLLLSPNYE 122


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 23.8 bits (49), Expect = 8.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 9   KAKKAKQAEIDRKRAEVRKRMEEAS 33
           KA+KA++  + ++RA+  K+M   S
Sbjct: 741 KARKAEEKRLQKERAKYAKQMSRES 765


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 404,373
Number of Sequences: 5004
Number of extensions: 10265
Number of successful extensions: 48
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 6
length of query: 130
length of database: 2,362,478
effective HSP length: 66
effective length of query: 64
effective length of database: 2,032,214
effective search space: 130061696
effective search space used: 130061696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)