GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001030-TA|BGIBMGA001030-PA|IPR001978|Troponin
         (130 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465...    28   2.8  
03_01_0555 + 4132630-4132923,4133514-4133771,4134125-4134249,413...    27   3.7  
09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158...    26   8.5  

>01_06_0923 + 33044283-33044433,33044826-33045242,33046209-33046538,
            33046806-33046876,33047283-33047357,33047435-33047578,
            33047645-33047816,33047933-33048616,33048711-33048767,
            33048850-33048956,33049485-33049610,33050221-33050295,
            33050387-33050499,33050789-33050905,33051384-33051444,
            33051690-33051763,33052267-33052388,33052472-33052620,
            33053525-33053635,33053946-33054008,33054689-33054722,
            33055253-33055375,33055971-33056033,33056130-33056196,
            33056311-33056356,33056446-33056552,33056923-33056971,
            33057208-33057273,33057544-33057630
          Length = 1286

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/25 (44%), Positives = 20/25 (80%)

Query: 9    KAKKAKQAEIDRKRAEVRKRMEEAS 33
            K  +AK+AE++++ +E+R+R E AS
Sbjct: 1059 KELQAKEAELNKRESELRRREEAAS 1083


>03_01_0555 +
           4132630-4132923,4133514-4133771,4134125-4134249,
           4134789-4134990,4135172-4135297,4135404-4135660,
           4135968-4136075,4136142-4136310,4136378-4136543,
           4136967-4136998,4137256-4137579,4137683-4137757,
           4138093-4138162,4138228-4138385,4138872-4139021
          Length = 837

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 94  DTIKRVCKDYHERIARLEDEKFDLEYIV 121
           +T  ++C+ Y E  A  +  KFDL YIV
Sbjct: 643 ETGPKICQKYIECPALFQGRKFDLRYIV 670


>09_01_0102 +
           1582793-1582898,1582988-1583093,1584115-1584172,
           1584676-1584745,1585132-1585197,1586374-1586429,
           1587992-1588078,1588819-1589139,1589827-1589946,
           1590747-1590881,1591529-1591605,1591681-1591756,
           1592800-1592874,1592971-1593075,1593299-1593374,
           1594482-1594617,1594702-1594804,1595186-1595298,
           1596907-1597111,1597173-1597301,1597403-1597517,
           1597710-1597795,1599108-1599203,1599615-1599751,
           1600374-1600476,1601809-1601888,1602013-1602091,
           1602241-1602298,1602489-1602586,1602673-1602767,
           1602861-1602918
          Length = 1074

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 98  RVCKDYHERIARLEDEKFDLEYIVKRKDMEV 128
           R+C    E+IA +E E  D+E I+ ++  ++
Sbjct: 649 RLCTSLGEKIAEMESEIADMERIISQRTRDM 679


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,162
Number of Sequences: 37544
Number of extensions: 58217
Number of successful extensions: 231
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 3
length of query: 130
length of database: 14,793,348
effective HSP length: 74
effective length of query: 56
effective length of database: 12,015,092
effective search space: 672845152
effective search space used: 672845152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)