Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001030-TA|BGIBMGA001030-PA|IPR001978|Troponin
(130 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039041-8|AAB94188.2| 194|Caenorhabditis elegans Troponin i pr... 56 6e-09
AB107583-1|BAD89381.1| 194|Caenorhabditis elegans troponin I 4 ... 56 6e-09
U40951-3|AAG01564.2| 242|Caenorhabditis elegans Uncoordinated p... 51 3e-07
AB107357-1|BAD89378.1| 242|Caenorhabditis elegans troponin I 2 ... 51 3e-07
Z81593-2|CAB04737.1| 260|Caenorhabditis elegans Hypothetical pr... 48 2e-06
AB107359-1|BAD89380.1| 260|Caenorhabditis elegans troponin I 3 ... 48 2e-06
Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical pr... 38 0.003
AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1 ... 38 0.003
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 34 0.028
U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t prot... 34 0.037
U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t pro... 31 0.26
U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 31 0.26
AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t pr... 30 0.60
AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t pr... 30 0.60
U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T prot... 29 0.80
U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle position... 29 0.80
AL110478-11|CAE17956.3| 758|Caenorhabditis elegans Hypothetical... 27 3.2
AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical ... 27 5.6
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 26 7.4
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 26 7.4
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 26 7.4
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 26 7.4
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 26 7.4
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 26 7.4
>AF039041-8|AAB94188.2| 194|Caenorhabditis elegans Troponin i
protein 4 protein.
Length = 194
Score = 56.4 bits (130), Expect = 6e-09
Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 14 KQAEIDRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 73
K AE +RK+ EVRKR+EEAS GF+TP
Sbjct: 11 KMAERERKKEEVRKRLEEASRMKKAKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQE 70
Query: 74 XXXXXXXXCGKPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEV 128
++D NED ++ V + ER+ LE E +D+ YIV++KD E+
Sbjct: 71 RQRILQERIIPLPDLD--NEDDLEAVYDEIRERLIDLESENYDVSYIVRQKDFEI 123
>AB107583-1|BAD89381.1| 194|Caenorhabditis elegans troponin I 4
protein.
Length = 194
Score = 56.4 bits (130), Expect = 6e-09
Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 14 KQAEIDRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 73
K AE +RK+ EVRKR+EEAS GF+TP
Sbjct: 11 KMAERERKKEEVRKRLEEASRMKKAKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQE 70
Query: 74 XXXXXXXXCGKPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEV 128
++D NED ++ V + ER+ LE E +D+ YIV++KD E+
Sbjct: 71 RQRILQERIIPLPDLD--NEDDLEAVYDEIRERLIDLESENYDVSYIVRQKDFEI 123
>U40951-3|AAG01564.2| 242|Caenorhabditis elegans Uncoordinated
protein 27 protein.
Length = 242
Score = 50.8 bits (116), Expect = 3e-07
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Query: 14 KQAEIDRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 73
K AE + K+AEVRKR+EEA GF+TP
Sbjct: 12 KAAEREAKKAEVRKRLEEAGNKKKAKKGFLTPERKKKLRKLLMVKAAEDLKRQQLLKEQE 71
Query: 74 XXXXXXXXCGKPKNIDDANE-DTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEV 128
N+D ++ ++++ D R+ +LE+EK+D+ Y+V + + E+
Sbjct: 72 RQKALADRTISLPNVDSIDDKGQLEKIYNDLWARLTQLEEEKYDINYVVSQTEAEI 127
>AB107357-1|BAD89378.1| 242|Caenorhabditis elegans troponin I 2
protein.
Length = 242
Score = 50.8 bits (116), Expect = 3e-07
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Query: 14 KQAEIDRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 73
K AE + K+AEVRKR+EEA GF+TP
Sbjct: 12 KAAEREAKKAEVRKRLEEAGNKKKAKKGFLTPERKKKLRKLLMVKAAEDLKRQQLLKEQE 71
Query: 74 XXXXXXXXCGKPKNIDDANE-DTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEV 128
N+D ++ ++++ D R+ +LE+EK+D+ Y+V + + E+
Sbjct: 72 RQKALADRTISLPNVDSIDDKGQLEKIYNDLWARLTQLEEEKYDINYVVSQTEAEI 127
>Z81593-2|CAB04737.1| 260|Caenorhabditis elegans Hypothetical
protein T20B3.2 protein.
Length = 260
Score = 48.0 bits (109), Expect = 2e-06
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 3/120 (2%)
Query: 10 AKKAKQAEIDRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXX 69
A+KA++ E+ K+AEVRKRMEEA+ GF+TP
Sbjct: 22 ARKAQEREL--KKAEVRKRMEEAAKKGSKKKGFLTPERKKKLRKLLMMKAAEDLKQQQML 79
Query: 70 XXXXXXXXXXXXCGKPKNIDDANED-TIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEV 128
++D N+ + ++ +D R+ LE+EKFD+ + V + + E+
Sbjct: 80 KEQERQKTLQQRTIPLPDVDSINDQGQLLKIYEDMFARVCALEEEKFDINFGVSQTEAEI 139
>AB107359-1|BAD89380.1| 260|Caenorhabditis elegans troponin I 3
protein.
Length = 260
Score = 48.0 bits (109), Expect = 2e-06
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 3/120 (2%)
Query: 10 AKKAKQAEIDRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXX 69
A+KA++ E+ K+AEVRKRMEEA+ GF+TP
Sbjct: 22 ARKAQEREL--KKAEVRKRMEEAAKKGSKKKGFLTPERKKKLRKLLMMKAAEDLKQQQML 79
Query: 70 XXXXXXXXXXXXCGKPKNIDDANED-TIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEV 128
++D N+ + ++ +D R+ LE+EKFD+ + V + + E+
Sbjct: 80 KEQERQKTLQQRTIPLPDVDSINDQGQLLKIYEDMFARVCALEEEKFDINFGVSQTEAEI 139
>Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical
protein F42E11.4 protein.
Length = 250
Score = 37.5 bits (83), Expect = 0.003
Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 2/116 (1%)
Query: 14 KQAEIDRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 73
K E + K+AEVRKR+EEA GF+TP
Sbjct: 25 KAQEREAKKAEVRKRLEEAG-QKKQKKGFLTPERKKKLRKLLMNKAAEDLKTQQLRKEQE 83
Query: 74 XXXXXXXXCGKPKNIDDANEDT-IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEV 128
N+D ++ ++ + D R+ LE+EK+D+ +I + +
Sbjct: 84 RVKVLAERTVALPNVDSIDDHAKLEAIYNDLFSRLCNLEEEKYDINHITTETETTI 139
>AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1
protein.
Length = 250
Score = 37.5 bits (83), Expect = 0.003
Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 2/116 (1%)
Query: 14 KQAEIDRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 73
K E + K+AEVRKR+EEA GF+TP
Sbjct: 25 KAQEREAKKAEVRKRLEEAG-QKKQKKGFLTPERKKKLRKLLMNKAAEDLKTQQLRKEQE 83
Query: 74 XXXXXXXXCGKPKNIDDANEDT-IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEV 128
N+D ++ ++ + D R+ LE+EK+D+ +I + +
Sbjct: 84 RVKVLAERTVALPNVDSIDDHAKLEAIYNDLFSRLCNLEEEKYDINHITTETETTI 139
>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
3, isoform b protein.
Length = 1178
Score = 34.3 bits (75), Expect = 0.028
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 87 NIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEV 128
N + + +K K+ H+RI +LE EK+DLE +R++ ++
Sbjct: 1043 NASEVPQSELKAKIKELHQRICKLETEKYDLEKRHERQEYDM 1084
>U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t protein
3, isoform a protein.
Length = 350
Score = 33.9 bits (74), Expect = 0.037
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 87 NIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDME 127
N + + +K K+ H+RI +LE EK+DLE +R++ +
Sbjct: 209 NASEVPQSELKAKIKELHQRICKLETEKYDLEKRHERQEYD 249
>U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t
protein 2, isoform b protein.
Length = 324
Score = 31.1 bits (67), Expect = 0.26
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 84 KPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEV 128
K +++ + +K K H RI +LE EK+DLE +R++ ++
Sbjct: 125 KAQDVSTLMPNDLKERIKGIHARIVKLEGEKYDLEKRRERQEYDL 169
>U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t
protein 2, isoform a protein.
Length = 428
Score = 31.1 bits (67), Expect = 0.26
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 84 KPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEV 128
K +++ + +K K H RI +LE EK+DLE +R++ ++
Sbjct: 229 KAQDVSTLMPNDLKERIKGIHARIVKLEGEKYDLEKRRERQEYDL 273
>AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t
protein 4, isoform b protein.
Length = 308
Score = 29.9 bits (64), Expect = 0.60
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 96 IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEV 128
+K K+ H+RI +LE +K+DLE +R++ ++
Sbjct: 216 MKAKIKELHQRICKLEAQKYDLEKRHERQEYDL 248
>AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t
protein 4, isoform a protein.
Length = 347
Score = 29.9 bits (64), Expect = 0.60
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 96 IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEV 128
+K K+ H+RI +LE +K+DLE +R++ ++
Sbjct: 216 MKAKIKELHQRICKLEAQKYDLEKRHERQEYDL 248
>U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T
protein.
Length = 405
Score = 29.5 bits (63), Expect = 0.80
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 96 IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEV 128
+K + H RI +LE EK+DLE +R+D ++
Sbjct: 232 LKERIRGLHARIVKLEAEKYDLEKRRERQDYDM 264
>U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle positioning
protein 2 protein.
Length = 405
Score = 29.5 bits (63), Expect = 0.80
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 96 IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEV 128
+K + H RI +LE EK+DLE +R+D ++
Sbjct: 232 LKERIRGLHARIVKLEAEKYDLEKRRERQDYDM 264
>AL110478-11|CAE17956.3| 758|Caenorhabditis elegans Hypothetical
protein Y26D4A.13 protein.
Length = 758
Score = 27.5 bits (58), Expect = 3.2
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 93 EDTIKRVCKDYHERIARLEDEKFDLEY 119
ED + R+C+ Y + + R+ + + +LEY
Sbjct: 671 EDVVNRLCESYKKLLVRVAELETELEY 697
>AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical
protein Y116A8A.8 protein.
Length = 293
Score = 26.6 bits (56), Expect = 5.6
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 92 NEDTIKRVCKDYHERIARLEDEKFDLEYI 120
+ D R CK+Y+ + RLE K ++EY+
Sbjct: 154 SHDDAHRACKEYNAVLTRLETPK-EMEYV 181
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 4 PGDYAKAKKAKQAEIDRKRAEVRKRMEE 31
P D A K AKQ EID + + ++++ E
Sbjct: 769 PSDSAPKKNAKQGEIDIRALQQKRQLAE 796
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 4 PGDYAKAKKAKQAEIDRKRAEVRKRMEE 31
P D A K AKQ EID + + ++++ E
Sbjct: 803 PSDSAPKKNAKQGEIDIRALQQKRQLAE 830
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 4 PGDYAKAKKAKQAEIDRKRAEVRKRMEE 31
P D A K AKQ EID + + ++++ E
Sbjct: 827 PSDSAPKKNAKQGEIDIRALQQKRQLAE 854
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 4 PGDYAKAKKAKQAEIDRKRAEVRKRMEE 31
P D A K AKQ EID + + ++++ E
Sbjct: 861 PSDSAPKKNAKQGEIDIRALQQKRQLAE 888
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 4 PGDYAKAKKAKQAEIDRKRAEVRKRMEE 31
P D A K AKQ EID + + ++++ E
Sbjct: 914 PSDSAPKKNAKQGEIDIRALQQKRQLAE 941
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 4 PGDYAKAKKAKQAEIDRKRAEVRKRMEE 31
P D A K AKQ EID + + ++++ E
Sbjct: 833 PSDSAPKKNAKQGEIDIRALQQKRQLAE 860
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.133 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,951
Number of Sequences: 27539
Number of extensions: 57502
Number of successful extensions: 404
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 32
length of query: 130
length of database: 12,573,161
effective HSP length: 74
effective length of query: 56
effective length of database: 10,535,275
effective search space: 589975400
effective search space used: 589975400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)
- SilkBase 1999-2023 -