GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001030-TA|BGIBMGA001030-PA|IPR001978|Troponin
         (130 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.21 
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   4.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 0.21
 Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 83  GKPKNIDDANEDTIKRVCKDYHER--IARLEDEKFDLEYIVKRKDM 126
           G  KN  D N +T+ R  + Y++R  +A+++ ++   +++   KD+
Sbjct: 501 GLHKNKPDMNYETMGRALRYYYQRGILAKVDGQRLVYQFVDVPKDI 546


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/15 (53%), Positives = 13/15 (86%)

Query: 8  AKAKKAKQAEIDRKR 22
          AKAK+ ++AEI++ R
Sbjct: 62 AKAKRLQEAEIEKLR 76


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,163
Number of Sequences: 429
Number of extensions: 533
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 130
length of database: 140,377
effective HSP length: 51
effective length of query: 79
effective length of database: 118,498
effective search space:  9361342
effective search space used:  9361342
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)