Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001030-TA|BGIBMGA001030-PA|IPR001978|Troponin
(130 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g02250.1 68417.m00304 invertase/pectin methylesterase inhibit... 29 0.77
At4g32260.1 68417.m04590 ATP synthase family contains Pfam profi... 28 2.3
At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein ... 28 2.3
At5g49945.1 68418.m06184 expressed protein strong similarity to ... 27 4.1
At5g03660.1 68418.m00325 expressed protein low similarity to out... 27 4.1
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH... 26 7.1
At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911... 26 7.1
At3g09980.1 68416.m01198 expressed protein contains Pfam profile... 26 9.4
At2g36410.2 68415.m04470 expressed protein contains Pfam profile... 26 9.4
At2g36410.1 68415.m04469 expressed protein contains Pfam profile... 26 9.4
>At4g02250.1 68417.m00304 invertase/pectin methylesterase inhibitor
family protein low similarity to SP|P83326
Pectinesterase inhibitor (Pectin methylesterase
inhibitor) (PMEI) {Actinidia chinensis}, pistil-specific
gene sts15 [Solanum tuberosum] GI:1616628; contains Pfam
profile PF04043: Plant invertase/pectin methylesterase
inhibitor
Length = 145
Score = 29.5 bits (63), Expect = 0.77
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 84 KPKNIDDANEDTIKRVCKDYHERIARLED 112
K KN++ A EDT+ K+Y + +A+L+D
Sbjct: 53 KQKNLEPALEDTLDDCSKNYLDAVAQLDD 81
>At4g32260.1 68417.m04590 ATP synthase family contains Pfam profile:
PF00430 ATP synthase B/B' CF(0); identical to cDNA
chloroplast ATP synthase beta chain precursor (atpG)
GI:5730140
Length = 219
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 9 KAKKAKQAEIDRKRAEVRKRMEE 31
K KK Q E++ K AE RK++EE
Sbjct: 159 KMKKETQVEVEEKLAEGRKKVEE 181
>At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein
contains tubulin-tyrosine ligase family domain,
Pfam:PF03133
Length = 867
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 94 DTIKRVCKDYHERIARLEDEKFDLEYIV 121
+T ++C+ Y E A + KFDL Y+V
Sbjct: 674 ETGPKICQKYIEHPALFKGNKFDLRYVV 701
>At5g49945.1 68418.m06184 expressed protein strong similarity to
unknown protein (pir||T09896)
Length = 480
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 7 YAKAKKAKQAEIDRKRAEVRKRMEEA 32
Y + A+Q + +K+AE +K MEEA
Sbjct: 421 YKELHNARQEALQKKKAEKKKMMEEA 446
>At5g03660.1 68418.m00325 expressed protein low similarity to
outer surface protein F [Borrelia burgdorferi]
GI:466482; contains Pfam profile PF04949: Family of
unknown function (DUF662)
Length = 173
Score = 27.1 bits (57), Expect = 4.1
Identities = 10/21 (47%), Positives = 18/21 (85%)
Query: 10 AKKAKQAEIDRKRAEVRKRME 30
A KAK+ EI++K+ E+R+R++
Sbjct: 46 AFKAKEEEIEKKKMEIRERVQ 66
>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
(MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
thaliana}
Length = 1324
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/45 (24%), Positives = 24/45 (53%)
Query: 83 GKPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDME 127
G + +D ++ K VC+ + + +++ + D E +V+ KD E
Sbjct: 218 GDDSSDEDWGKNVGKEVCESEEDDVELVDENEMDEEELVEEKDEE 262
>At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911:
Plant protein of unknown function (DUF869)
Length = 982
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 92 NEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEVV 129
N + +K K Y E++ +LED+ DL+ + + ++V
Sbjct: 43 NLNGLKDEVKSYEEKVTKLEDQIKDLDLKLSTANADIV 80
>At3g09980.1 68416.m01198 expressed protein contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 178
Score = 25.8 bits (54), Expect = 9.4
Identities = 9/21 (42%), Positives = 18/21 (85%)
Query: 10 AKKAKQAEIDRKRAEVRKRME 30
A +AK+ EI++K+ E+R+R++
Sbjct: 52 AFRAKEEEIEKKKMEIRERVQ 72
>At2g36410.2 68415.m04470 expressed protein contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 192
Score = 25.8 bits (54), Expect = 9.4
Identities = 10/21 (47%), Positives = 18/21 (85%)
Query: 10 AKKAKQAEIDRKRAEVRKRME 30
A +AK+ EI+++R EVR+R++
Sbjct: 67 AFRAKEDEIEKRRMEVRERIQ 87
>At2g36410.1 68415.m04469 expressed protein contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 195
Score = 25.8 bits (54), Expect = 9.4
Identities = 10/21 (47%), Positives = 18/21 (85%)
Query: 10 AKKAKQAEIDRKRAEVRKRME 30
A +AK+ EI+++R EVR+R++
Sbjct: 67 AFRAKEDEIEKRRMEVRERIQ 87
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.133 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,419
Number of Sequences: 28952
Number of extensions: 51778
Number of successful extensions: 260
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 10
length of query: 130
length of database: 12,070,560
effective HSP length: 73
effective length of query: 57
effective length of database: 9,957,064
effective search space: 567552648
effective search space used: 567552648
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)
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