Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001029-TA|BGIBMGA001029-PA|undefined
         (199 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    27   0.077
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.7  

>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 27.5 bits (58), Expect = 0.077
 Identities = 15/67 (22%), Positives = 31/67 (46%)

Query: 79  EITATPPAGRKVPDCRAPTVQDFFIDRMITVDTAGWEPVFSLMHQLAEMFNFYDYTTLGS 138
           ++ AT   G +V   + P  + + + R +T  +A       L H + ++  F++Y  L  
Sbjct: 137 DVIATAAFGIRVNSVQEPNNEFYAMGRSLTTFSAFQILKIFLAHLVPKIAEFFEYRVLPR 196

Query: 139 KIAKYVE 145
           K+  + E
Sbjct: 197 KVTDFFE 203


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 25  SLNVCGKDGCYSEIQLDNILLEEEDCSN 52
           S  VC  D  Y EI+   I  E++ C N
Sbjct: 773 SCTVCTCDAKYLEIKCKRIYNEKQCCKN 800


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.133    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,149
Number of Sequences: 317
Number of extensions: 1493
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 199
length of database: 114,650
effective HSP length: 54
effective length of query: 145
effective length of database: 97,532
effective search space: 14142140
effective search space used: 14142140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)