Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001029-TA|BGIBMGA001029-PA|undefined
         (199 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    26   3.3  
SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces...    26   4.4  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.8  
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    25   7.6  

>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 102 FIDRMITVDTAGWEPVFSLMHQLAEMFNFYDYTTLGSKIAKYVES 146
           FI+R     TAGW     +  + A   +  D+  + SK+ K ++S
Sbjct: 73  FINRDGDSQTAGWTRGVKVFREQARETDEIDFQLITSKVTKLIDS 117


>SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 122 HQLAEMFNFYDYTT-LGSKIAKYVE 145
           H+ AE+F F D TT +G KI  Y++
Sbjct: 35  HEKAELFKFPDRTTAIGKKIDDYLK 59


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 78   QEITATPPAGRKVPDCRAPTVQDFFIDRMITVDTAG 113
            ++  ATP + R+    +  ++ DF ID+ + VD  G
Sbjct: 2418 EDALATPSSSRRDSRSKRASLIDFTIDKCLDVDDEG 2453


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 9/20 (45%), Positives = 15/20 (75%), Gaps = 3/20 (15%)

Query: 41 DNILLEEEDCSNQHLQLSYW 60
          +N+ +E ++C+N   QLSYW
Sbjct: 72 ENVAMERKECAN---QLSYW 88


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.133    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 764,242
Number of Sequences: 5004
Number of extensions: 27469
Number of successful extensions: 40
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 4
length of query: 199
length of database: 2,362,478
effective HSP length: 69
effective length of query: 130
effective length of database: 2,017,202
effective search space: 262236260
effective search space used: 262236260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)