Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001029-TA|BGIBMGA001029-PA|undefined
         (199 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22070.1 68415.m02621 pentatricopeptide (PPR) repeat-containi...    30   1.2  
At4g38320.1 68417.m05416 expressed protein contains Pfam domain,...    29   1.6  
At4g37680.1 68417.m05329 expressed protein contains Pfam domain,...    29   2.1  
At2g42320.1 68415.m05238 nucleolar protein gar2-related contains...    27   6.5  
At5g27460.1 68418.m03279 pentatricopeptide (PPR) repeat-containi...    27   8.5  
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl...    27   8.5  

>At2g22070.1 68415.m02621 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 786

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 74  LGLVQEITATPPAGRKVPDCRAPTVQDFFIDRMITVDTAGWEPVFSLMHQLAEM 127
           LGL   ++ +         C  P +  F  DRM+  D + W  + +L  Q+ +M
Sbjct: 175 LGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQM 228


>At4g38320.1 68417.m05416 expressed protein contains Pfam domain,
           PF03006: Uncharacterised protein family (Hly-III /
           UPF0073)
          Length = 374

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 101 FFIDRMITVDTAGWEP----VFSLMHQLAEMFNFYDYTTLGSKIAKYVESHPSSW 151
           FF+   +T+ TA   P    + SL H+L ++    D   L S++   + S PSSW
Sbjct: 89  FFLFLALTIYTATKVPSVVDLHSLQHRLPDLLRKTDLHKLHSELMSRLPSSPSSW 143


>At4g37680.1 68417.m05329 expressed protein contains Pfam domain,
           PF03006: Uncharacterised protein family (Hly-III /
           UPF0073)
          Length = 385

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 101 FFIDRMITVDTAGWEP----VFSLMHQLAEMFNFYDYTTLGSKIAKYVESHPSSW 151
           FF+   +T+ TA   P    + SL H+L ++    D   L S++   + S PSSW
Sbjct: 89  FFLFLALTIYTATKVPSVVDLHSLQHRLPDLLRKTDLHKLHSELMARLPSSPSSW 143


>At2g42320.1 68415.m05238 nucleolar protein gar2-related contains
           weak similarity to Swiss-Prot:P41891 protein gar2
           [Schizosaccharomyces pombe]
          Length = 669

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 30  GKDGCYSEIQLDNILLEEEDCSNQHLQLSYWLH--VSFRQMLSEA 72
           GK    +   +  ++L  + C N   +L++WL   ++ RQ++S+A
Sbjct: 236 GKRATIARNSVSGLVLVAKSCGNDVSRLTFWLSNIIALRQIISQA 280


>At5g27460.1 68418.m03279 pentatricopeptide (PPR) repeat-containing
           protein low similarity to DNA-binding protein [Triticum
           aestivum] GI:6958202; contains Pfam profile PF01535: PPR
           repeat
          Length = 491

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 10  AHLKNYDAMLRTMDKSLNVCGKDGCYSEIQLDNILLEEEDCSNQHLQLSYW 60
           A L N + ++R  + S +VCG+  C + I + + L++  D        S W
Sbjct: 295 ASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSEW 345


>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
           identical to ubiquitin-protein ligase 1 [Arabidopsis
           thaliana] GI:7108521; E3, HECT-domain protein family;
           similar to GI:7108521, GB:AAF36454 from [Arabidopsis
           thaliana]
          Length = 3891

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 31  KDGCYSEIQLDNILLEEEDCSNQHLQLSYWLHVSFRQMLSEADL 74
           KD     +++  ++LE  +C+N+H   SY  H+S     ++AD+
Sbjct: 334 KDAVLQVLRVIRVVLE--NCTNKHFYSSYEQHLSLLLASTDADV 375


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.133    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,905,730
Number of Sequences: 28952
Number of extensions: 136303
Number of successful extensions: 270
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 6
length of query: 199
length of database: 12,070,560
effective HSP length: 78
effective length of query: 121
effective length of database: 9,812,304
effective search space: 1187288784
effective search space used: 1187288784
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)