GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001029-TA|BGIBMGA001029-PA|undefined
         (199 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0246 - 16024454-16024529,16024635-16024720,16024805-160248...    28   5.9  
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118...    28   5.9  

>09_04_0246 -
           16024454-16024529,16024635-16024720,16024805-16024894,
           16025349-16025435,16026112-16026229,16026852-16026982,
           16027619-16027909,16028000-16028124,16028209-16028334,
           16028452-16028487,16028599-16028902
          Length = 489

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 40  LDNILLEEEDCSNQHLQLSYWLHVSFRQMLSEADLGLVQEITATPPAGRKVPDCRAPTVQ 99
           +DN L   E+   ++L+   WL    RQ L E +     EI   PP  R   D   P V 
Sbjct: 65  VDNALKIREELHQKYLRAEPWLKEQERQRL-ERNKRFTTEIINQPPDYRGEWD---PYVS 120

Query: 100 DFFIDRMITVDTAGWE 115
           D        +   GWE
Sbjct: 121 DDEFGTSFELKRTGWE 136


>01_05_0740 -
           24809951-24810394,24810622-24810700,24811651-24811809,
           24812083-24812246,24812436-24812624,24813151-24813408,
           24813463-24813951,24814062-24814262,24814368-24814639,
           24814661-24814685,24814776-24814937,24815065-24815104,
           24815244-24815353,24815812-24815898,24816013-24816507
          Length = 1057

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 45  LEEEDCSNQHLQLSYWLHVSFRQMLSEADLGLVQEI 80
           LEEE+   +HLQ+S W+ +   +  SE   G  +E+
Sbjct: 623 LEEEEFWKEHLQVSGWIDIMQLKERSEQPHGTWEEV 658


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.133    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,846,229
Number of Sequences: 37544
Number of extensions: 168681
Number of successful extensions: 346
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 2
length of query: 199
length of database: 14,793,348
effective HSP length: 78
effective length of query: 121
effective length of database: 11,864,916
effective search space: 1435654836
effective search space used: 1435654836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)