GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001029-TA|BGIBMGA001029-PA|undefined
         (199 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical pr...    32   0.32 
AF016686-1|AAB66240.1|  399|Caenorhabditis elegans Hypothetical ...    30   1.3  

>U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical
           protein C25A8.4 protein.
          Length = 1067

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 8/80 (10%)

Query: 75  GLVQEITATPPAGRKVPDCRAPTVQDF-------FIDRMITVDTAGWEPVFSLMHQLAEM 127
           GLV+ I +T   G ++     P V DF       FI+ ++  DTA    +     Q +  
Sbjct: 469 GLVKAINSTNADGLEISWTSQPMVSDFDKKNLKSFINDIVAADTAKMVEIVVATSQQSAY 528

Query: 128 FNFYDYTTLGSKIAKYVESH 147
            +FYDY  L +K A  +  H
Sbjct: 529 SDFYDYEHL-NKTASLIVLH 547


>AF016686-1|AAB66240.1|  399|Caenorhabditis elegans Hypothetical
           protein R07C3.11 protein.
          Length = 399

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 41  DNILLEEEDCSNQHLQLSYWLHV 63
           D ILL+  D SN HL+LSY L +
Sbjct: 83  DTILLDNRDPSNMHLELSYELQL 105


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.133    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,133,362
Number of Sequences: 27539
Number of extensions: 148532
Number of successful extensions: 353
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 2
length of query: 199
length of database: 12,573,161
effective HSP length: 78
effective length of query: 121
effective length of database: 10,425,119
effective search space: 1261439399
effective search space used: 1261439399
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)