GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001029-TA|BGIBMGA001029-PA|undefined
         (199 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    23   2.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   7.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   7.9  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/19 (36%), Positives = 15/19 (78%)

Query: 30  GKDGCYSEIQLDNILLEEE 48
           G+   Y +++LDN+LL+++
Sbjct: 103 GRGIVYRDLKLDNVLLDQD 121


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 6   SDKVAHLKNYDAMLRTMDKSLNV 28
           S  V+H+ N++  LR   K +NV
Sbjct: 232 SQIVSHVVNHEKALREQAKKMNV 254


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)

Query: 9   VAHLKNYDAMLRTMDKSLNV 28
           ++ ++N++ MLR   K +NV
Sbjct: 244 LSSIRNHEKMLREQAKKMNV 263


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)

Query: 9   VAHLKNYDAMLRTMDKSLNV 28
           ++ ++N++ MLR   K +NV
Sbjct: 244 LSSIRNHEKMLREQAKKMNV 263


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.133    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,686
Number of Sequences: 429
Number of extensions: 1641
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 199
length of database: 140,377
effective HSP length: 55
effective length of query: 144
effective length of database: 116,782
effective search space: 16816608
effective search space used: 16816608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)