Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001027-TA|BGIBMGA001027-PA|IPR000223|Peptidase S26A,
signal peptidase I, IPR011056|Peptidase S24 and S26, C-terminal
region, IPR006198|Peptidase S24, S26A and S26B
(153 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.07c |||mitochondrial inner membrane peptidase complex c... 116 2e-27
SPBC336.13c |||mitochondrial inner membrane peptidase complex ca... 79 3e-16
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 27 1.7
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 26 2.2
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo... 26 2.2
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces... 24 8.8
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 24 8.8
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 24 8.8
>SPBC2D10.07c |||mitochondrial inner membrane peptidase complex
catalytic subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 116 bits (279), Expect = 2e-27
Identities = 57/131 (43%), Positives = 80/131 (61%), Gaps = 4/131 (3%)
Query: 18 LQYACITHCTFEYIGDFVMCSGPSMEPTLESNN-ILLTEHISPRLQK-LRRGDIIIAKSP 75
+Q A H EY+ M SGPSM PTL S +L + + R + GD++++ P
Sbjct: 12 VQIAAFVHQIHEYLFQVQMTSGPSMMPTLNSGGEFVLLDKLHGRFARSCSVGDVVVSAKP 71
Query: 76 SNPRQNICKRIKGLPGDK--VRGNFPKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGL 133
S+ +Q++CKRI G+PGD V + +P GHVWL GDN ++S DSR YGPVP GL
Sbjct: 72 SDSKQHVCKRIIGMPGDTIYVDPTSSNKKITIPLGHVWLAGDNIAHSLDSRNYGPVPMGL 131
Query: 134 IRSRVVCRVWP 144
I+++V+ RVWP
Sbjct: 132 IKAKVIARVWP 142
>SPBC336.13c |||mitochondrial inner membrane peptidase complex
catalytic subunit 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 180
Score = 79.0 bits (186), Expect = 3e-16
Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 5/114 (4%)
Query: 39 GPSMEPTL--ESNNILLTEHISPRLQK-LRRGDIIIAKSPSNPRQNICKRIKGLPGDKVR 95
G SM+P E+N + + + K +RGD++I +SP NP + + KR+ G+ D ++
Sbjct: 44 GRSMKPAFNPETNMLQRDRVLLWKWNKDYKRGDVVILRSPENPEELLVKRVLGVEYDIMK 103
Query: 96 GNFPKRSQVVP--RGHVWLEGDNSSNSADSRIYGPVPAGLIRSRVVCRVWPLDK 147
PK+ +VP GHVW+EGD +S DS +GPV GLI ++V+ ++P +
Sbjct: 104 TRPPKKLSLVPVPEGHVWVEGDEQFHSIDSNKFGPVSTGLITAKVIAILFPFSR 157
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 26.6 bits (56), Expect = 1.7
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 43 EPTLESNNILLTEHISPRLQKLR 65
E +E N LL E I PRL KLR
Sbjct: 189 EAKVEEINTLLREEIEPRLTKLR 211
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 26.2 bits (55), Expect = 2.2
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 47 ESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVRGN 97
E + + +I+ + LR D+ PS P + C+R+KG G + RGN
Sbjct: 305 EFMQLSIAMYINSEMPGLRPSDM-----PSKPIRGFCQRLKGKQG-RFRGN 349
>SPAC1B3.07c |vps28||ESCRT I complex subunit
Vps28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.2 bits (55), Expect = 2.2
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 48 SNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPG------DKVRGNFPKR 101
SN I T S + + K+PSNP +I K I GL D +R NF +
Sbjct: 119 SNAISTTAEPSIAMNDTTPQTVNPTKAPSNPSASIAKSIAGLVQNFITTLDAIRLNFIAK 178
Query: 102 SQVVP 106
Q+ P
Sbjct: 179 DQLHP 183
>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 24.2 bits (50), Expect = 8.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 60 RLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVRGNFPKRS 102
RLQ+LRR I + S P + + +PG + N K S
Sbjct: 68 RLQQLRRAIIRLKNDRSKPIDKLLVSVYLMPGPEWEENGEKNS 110
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 24.2 bits (50), Expect = 8.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 26 CTFEYIGDFVMCSGPS 41
C+ +Y G ++MC+G S
Sbjct: 230 CSIQYQGKYIMCAGGS 245
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 24.2 bits (50), Expect = 8.8
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 41 SMEPTLESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIK----GLPGDKVRG 96
S T++++ + + + QK GD+II+ +P Q I + L + + G
Sbjct: 194 SASQTVDNSQLSSIVGNNNKFQKTGSGDVIISDLEMDPNQTISNKSASSAFSLFSNLIGG 253
Query: 97 NFPKR---SQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLIRSRV 138
+ K S ++ + L N +NS + V A LI +V
Sbjct: 254 KYLKEEDLSPILKQMQEHLTKKNVANSIALELCESVKASLINKKV 298
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.323 0.140 0.444
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 756,741
Number of Sequences: 5004
Number of extensions: 31717
Number of successful extensions: 89
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 8
length of query: 153
length of database: 2,362,478
effective HSP length: 67
effective length of query: 86
effective length of database: 2,027,210
effective search space: 174340060
effective search space used: 174340060
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 50 (24.2 bits)
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