Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001027-TA|BGIBMGA001027-PA|IPR000223|Peptidase S26A,
signal peptidase I, IPR011056|Peptidase S24 and S26, C-terminal
region, IPR006198|Peptidase S24, S26A and S26B
(153 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0417 - 23312875-23312925,23314136-23314246,23315073-23315537 103 5e-23
04_01_0338 + 4424928-4425072,4425158-4425233,4425350-4425515,442... 73 1e-13
03_01_0337 + 2664648-2664670,2664752-2664838,2664930-2665095,266... 61 4e-10
02_02_0375 + 9543411-9543872,9547222-9547290,9547382-9547384,954... 51 4e-07
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 51 5e-07
04_01_0008 - 173220-173301,173398-173504,173813-173996,176113-17... 43 9e-05
07_03_0647 - 20253380-20253505,20253718-20253727,20253864-202539... 30 0.71
07_03_0642 - 20216944-20217069,20217282-20217291,20217428-202175... 30 0.71
09_06_0268 + 21942591-21942690,21942821-21942904,21943116-219431... 30 0.94
06_03_0849 - 25344261-25344416,25344652-25344808,25344917-253450... 30 0.94
06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070... 29 2.2
09_02_0560 - 10679432-10680502 27 5.0
06_03_0604 - 22682421-22682561 27 8.7
>11_06_0417 - 23312875-23312925,23314136-23314246,23315073-23315537
Length = 208
Score = 103 bits (248), Expect = 5e-23
Identities = 50/114 (43%), Positives = 73/114 (64%), Gaps = 7/114 (6%)
Query: 39 GPSMEPTLE-SNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVR-- 95
GPSM P + + +++ + +S RL ++ GD ++ SP NPR+ + KR+ G+ GD V
Sbjct: 83 GPSMLPAMNLAGDVVAVDLVSARLGRVASGDAVLLVSPENPRKAVVKRVVGMEGDAVTFL 142
Query: 96 ---GNFP-KRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLIRSRVVCRVWPL 145
GN ++ VVP+GHVW++GDN S DSR +GPVP GLI ++ CRVWPL
Sbjct: 143 VDPGNSDASKTVVVPKGHVWVQGDNIYASRDSRQFGPVPYGLITGKIFCRVWPL 196
>04_01_0338 +
4424928-4425072,4425158-4425233,4425350-4425515,
4425669-4425791
Length = 169
Score = 72.9 bits (171), Expect = 1e-13
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 39 GPSMEPTLES---NNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVR 95
G SM PTLES + L++ L RGD+++ +SP+ R + KR+ LPGD ++
Sbjct: 37 GTSMNPTLESQQGDRALVSRLCLDARYGLSRGDVVVFRSPTEHRSLLVKRLIALPGDWIQ 96
Query: 96 GNFPKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLI 134
+ + +P GH W+EGDN S DSR YGP+ L+
Sbjct: 97 VPAAQEIRQIPVGHCWVEGDNPDVSWDSRSYGPLWCALV 135
>03_01_0337 +
2664648-2664670,2664752-2664838,2664930-2665095,
2665817-2665891,2666931-2667038
Length = 152
Score = 60.9 bits (141), Expect = 4e-10
Identities = 30/88 (34%), Positives = 49/88 (55%)
Query: 46 LESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVRGNFPKRSQVV 105
LE ++L E + + GD+++ K PS+ R+ KR+ LPG+ ++ +
Sbjct: 10 LELGAVVLAERSCLQKYQFSHGDVVLFKCPSDHRELFVKRLIALPGEWMQLPGTPDIIKI 69
Query: 106 PRGHVWLEGDNSSNSADSRIYGPVPAGL 133
P GH W+EGDN++ S DSR +GP G+
Sbjct: 70 PEGHCWVEGDNAACSWDSRSFGPEVDGI 97
>02_02_0375 +
9543411-9543872,9547222-9547290,9547382-9547384,
9548336-9548422,9549027-9549094,9549192-9549333
Length = 276
Score = 51.2 bits (117), Expect = 4e-07
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 41 SMEPTLESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVRG---- 96
SM PT + + ++ E ++ +K DI+I KSP P + K + +VR
Sbjct: 139 SMFPTFDVGDRIVAEKVTYYFRKPCINDIVIFKSP--PVLQEVHKGKLVVNGEVRNEEFI 196
Query: 97 ----NFPKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLIRSRVVCRVWPLDKITS 150
++ VP V++ GDN +NS DS ++GP+P+ I R + R WP +I S
Sbjct: 197 LEPPSYDMNPVQVPENSVFVMGDNRNNSYDSHVWGPLPSKNILGRSIFRYWPPGRIGS 254
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 50.8 bits (116), Expect = 5e-07
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 97 NFPKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLIRSRVVCRVWPLDKIT 149
N+ +VP G+V++ GDN +NS DS +GP+P I R V R WP +IT
Sbjct: 343 NYEMEPMLVPEGYVFVLGDNRNNSFDSHNWGPLPVRNIIGRSVFRYWPPSRIT 395
>04_01_0008 -
173220-173301,173398-173504,173813-173996,176113-176288,
176612-176683
Length = 206
Score = 43.2 bits (97), Expect = 9e-05
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 67 GDIIIAKSPSNPRQNICKRIKGLPGDKVRGNFPKRSQ-VVPRGHVWLEGDNSS----NSA 121
GD+++ K P I +R+ L G ++ N K V+ + W+ DN S +
Sbjct: 88 GDVVLLKDPEKSDDLIVRRLAALEGYEMVSNDEKDEPFVLDKDQCWVLADNQSLKPKEAR 147
Query: 122 DSRIYGPVPAGLIRSRVV 139
DSR++GPVP I RV+
Sbjct: 148 DSRLFGPVPMTDILGRVI 165
>07_03_0647 -
20253380-20253505,20253718-20253727,20253864-20253977,
20254063-20254382
Length = 189
Score = 30.3 bits (65), Expect = 0.71
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 36 MCSGPSMEPTLESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRI--KGLPGDK 93
M GP S ++ + H+ R QK +R + + +S S P +I R+ + + G K
Sbjct: 1 MADGPWPTTPPGSASLSVLNHVWYRRQKTKRSEGKVKRSDSVPVASITPRVALQTVNGGK 60
Query: 94 VRGNFPKRSQVVPRGHVWL 112
+ R Q+ H WL
Sbjct: 61 PQRKHGNRQQIAAALHDWL 79
>07_03_0642 -
20216944-20217069,20217282-20217291,20217428-20217541,
20217627-20217946
Length = 189
Score = 30.3 bits (65), Expect = 0.71
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 36 MCSGPSMEPTLESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRI--KGLPGDK 93
M GP S ++ + H+ R QK +R + + +S S P +I R+ + + G K
Sbjct: 1 MADGPWPTTPPGSASLSVLNHVWYRRQKTKRSEGKVKRSDSVPVASITPRVALQTVNGGK 60
Query: 94 VRGNFPKRSQVVPRGHVWL 112
+ R Q+ H WL
Sbjct: 61 PQRKHGNRQQIAAALHDWL 79
>09_06_0268 +
21942591-21942690,21942821-21942904,21943116-21943192,
21943266-21943336,21943646-21943717,21943894-21943965,
21944057-21944122,21944411-21944476,21944553-21944770,
21944983-21945254,21945513-21945778,21945879-21945999,
21946094-21946230,21946362-21946518,21947055-21947189
Length = 637
Score = 29.9 bits (64), Expect = 0.94
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 21 ACITHCTFEYIGDFVMCSGPSMEPTLESNNILLTEHISPRL 61
AC H EY+ + +CS P + ++S+N+LL ++P L
Sbjct: 448 ACTAHA-LEYLHE--VCSPPVLHKNIKSSNVLLDADLNPHL 485
>06_03_0849 -
25344261-25344416,25344652-25344808,25344917-25345056,
25345160-25345295,25345392-25345663,25345809-25346068,
25346716-25347035,25347287-25347352,25347439-25347510,
25347609-25347680,25347776-25347858,25348068-25348139,
25348389-25348485,25348918-25349050,25349158-25349236
Length = 704
Score = 29.9 bits (64), Expect = 0.94
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 14/117 (11%)
Query: 4 MNFFGKTCGFI--GYALQYACITHCTFEYIGDFVMCSGPSMEPTLESNNILLTEHISPRL 61
++FF T + + ++ A T EY+ + +C P + L+S NILL + SP L
Sbjct: 482 LHFFDDTSKILTWNHRMRIALGTARALEYLHE--VCLPPVVHRNLKSANILLDKEYSPHL 539
Query: 62 QKLRRGDIIIAKSPSNPRQNICKRIKG-----LPGDKVRGNFPKRSQVVPRGHVWLE 113
D +A NP + + + G P + G + +S V G V LE
Sbjct: 540 -----SDCGLAALTPNPEREVSTEVFGSFGYSAPEFAMSGIYTVKSDVYSFGVVMLE 591
>06_03_0763 -
24405525-24405701,24406209-24406368,24406924-24407005,
24407098-24407167,24407443-24407607,24407731-24407874,
24408467-24408715,24409006-24409221,24409306-24409398
Length = 451
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 20 YACITHCTFEYIGDFVMCSGPSMEPTLESNNILLTEH-ISPRLQKLRRGDII 70
YAC TH F SG E + +N+ILL EH P+L L +++
Sbjct: 331 YACSTHAVFSPPA-IERLSGGIFEEVIVTNSILLPEHKCFPQLTVLSMANLV 381
>09_02_0560 - 10679432-10680502
Length = 356
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 85 RIKGLPGDKVRGNFPKRSQVVPRGHVWLEGDNSSNSADSRI-YGPVPAGLIRSRVVCRVW 143
R +G DK P++++VVP ++ D + GP A L+R+ C+ W
Sbjct: 3 RRRGRRADKANCRVPRKAKVVPAAATSVDDVPDHLLEDILLRLGPSSACLVRAAYACKRW 62
>06_03_0604 - 22682421-22682561
Length = 46
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 56 HISPRLQKLRRGDIIIAKSPSNPR 79
H SPRL++LRRG + P PR
Sbjct: 7 HFSPRLRRLRRGPGEEKQLPRRPR 30
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.140 0.444
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,975,904
Number of Sequences: 37544
Number of extensions: 212555
Number of successful extensions: 554
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 15
length of query: 153
length of database: 14,793,348
effective HSP length: 76
effective length of query: 77
effective length of database: 11,940,004
effective search space: 919380308
effective search space used: 919380308
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)
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