GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001027-TA|BGIBMGA001027-PA|IPR000223|Peptidase S26A,
signal peptidase I, IPR011056|Peptidase S24 and S26, C-terminal
region, IPR006198|Peptidase S24, S26A and S26B
         (153 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81475-7|CAB03913.2|  132|Caenorhabditis elegans Hypothetical pr...   101   2e-22
AC024826-5|AAF60800.1|  152|Caenorhabditis elegans Hypothetical ...    69   1e-12
AC199169-1|ABO33259.1|  450|Caenorhabditis elegans Hypothetical ...    31   0.27 
Z49073-5|CAA88890.1| 1122|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U58754-8|AAK72082.1|  325|Caenorhabditis elegans Serpentine rece...    27   4.5  

>Z81475-7|CAB03913.2|  132|Caenorhabditis elegans Hypothetical
           protein C24H11.6 protein.
          Length = 132

 Score =  101 bits (243), Expect = 2e-22
 Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 1/113 (0%)

Query: 35  VMCSGPSMEPTLESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKV 94
           V+CSGPSM PT+   +++L E  S R + ++ GDI+   +P  P++ +CKRI    GD V
Sbjct: 2   VICSGPSMHPTIHDGDLVLAERFSIRNKNVQVGDIVGCVNPQKPKELLCKRIAAKEGDPV 61

Query: 95  RGNFPKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLIRSRVVCRVWPLDK 147
             +     + VP GHV+L GDN   S DSR +GPVP  L++ R+  R+WP ++
Sbjct: 62  TSHLLPSGR-VPIGHVFLRGDNGPVSTDSRHFGPVPEALVQIRLSLRIWPPER 113


>AC024826-5|AAF60800.1|  152|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.8 protein.
          Length = 152

 Score = 69.3 bits (162), Expect = 1e-12
 Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 6/129 (4%)

Query: 22  CITHCTFEYIGDFVMCSGPSMEPTLESNNILLTEH----ISP-RLQKLRRGDIIIAKSPS 76
           C+    F+ +G      G SM+PTL+  +    +     +S   L K   G I+   SP 
Sbjct: 15  CVVFTFFDVVGHPAQVVGNSMQPTLQGGDARWYKRDIVWLSTWNLYKCSPGTILTFVSPR 74

Query: 77  NPRQNICKRIKGLPGDKVRGNF-PKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLIR 135
           +P     KR+  +    VR    P+    +P+GH W+EGDN  +  DS +YGPV   L++
Sbjct: 75  DPDAVHIKRVTAVENAIVRPEKRPELITDIPKGHYWMEGDNPEHRHDSNVYGPVSTSLVK 134

Query: 136 SRVVCRVWP 144
            R    +WP
Sbjct: 135 GRATHIIWP 143


>AC199169-1|ABO33259.1|  450|Caenorhabditis elegans Hypothetical
           protein F38A1.8 protein.
          Length = 450

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 41  SMEPTLESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVRGNFPK 100
           SM   L     L  E ++P ++K+R  ++I+    S P + IC+ +      KV  NF +
Sbjct: 316 SMIKGLVGEKKLSAEDLNPLIEKMRE-NLILKNVASEPAEKICQSVVSKLEGKVVNNFSR 374

Query: 101 RSQVV 105
            +Q V
Sbjct: 375 VAQEV 379


>Z49073-5|CAA88890.1| 1122|Caenorhabditis elegans Hypothetical protein
            ZK970.6 protein.
          Length = 1122

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 12   GFIGYALQYACITHCTFEYIGDFVMCSGPSMEPTLESNNILLTEHISPRLQKLRRGDIII 71
            G +G ++   C+   T            PSM    E+ + LLT+H   + +   RG++II
Sbjct: 995  GVVGLSMPRYCLFGDTVNTASRMESNGKPSMIHMSEAAHSLLTDHYPHQYETSSRGEVII 1054


>U58754-8|AAK72082.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 13 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 3   FMNFFGKTCGFIGYALQYACITHCTFEYIGDF 34
           F + FG T  ++GY+L   C +H  +  +  F
Sbjct: 80  FCHHFGPTTCYVGYSLMLHCFSHSLWSLLLSF 111


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.140    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,159,469
Number of Sequences: 27539
Number of extensions: 176498
Number of successful extensions: 300
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 5
length of query: 153
length of database: 12,573,161
effective HSP length: 75
effective length of query: 78
effective length of database: 10,507,736
effective search space: 819603408
effective search space used: 819603408
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)