Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001026-TA|BGIBMGA001026-PA|IPR001320|Ionotropic
glutamate receptor
(496 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0214 + 15711576-15711891,15712615-15713903,15714410-157151... 51 2e-06
04_04_0940 - 29539138-29539626,29540125-29540531,29540631-295406... 51 2e-06
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928... 50 4e-06
07_01_0026 + 190568-190829,192475-194534,194620-195168 48 1e-05
06_03_1142 + 27961999-27962263,27963735-27965080,27965158-279654... 48 2e-05
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 39 0.011
09_04_0195 - 15509412-15509580,15510136-15510467,15510494-155109... 36 0.098
09_04_0213 + 15706638-15707915 35 0.17
09_04_0204 - 15565684-15566223,15567272-15567678,15568143-155684... 34 0.30
09_04_0199 - 15533619-15534107,15534956-15535362,15535559-155358... 33 0.39
06_01_0616 + 4467439-4467733,4469232-4469294,4469840-4471176,447... 33 0.52
09_04_0203 - 15556064-15556561,15557537-15557581,15557852-155582... 33 0.69
05_02_0149 + 7107830-7108095,7109115-7109229,7109917-7110117 29 8.5
04_01_0476 + 6215401-6217445,6217538-6217630,6218031-6218133,621... 29 8.5
>09_04_0214 +
15711576-15711891,15712615-15713903,15714410-15715117,
15715369-15715908
Length = 950
Score = 51.2 bits (117), Expect = 2e-06
Identities = 87/395 (22%), Positives = 155/395 (39%), Gaps = 49/395 (12%)
Query: 27 QAYGVAFKIIDILQQKFN-FTYEIVIPHRNFEIGGSKPE-----DSLIGLTNTSKVDMIA 80
+ Y I++ ++ N Y+I PH E G K E D LI + D
Sbjct: 484 EKYNFTGLCIEVFEEVLNGLPYKI--PHDYVEFGNGKGESNGTYDELIYKVYQNDFDAAV 541
Query: 81 AFIPRLVRFRKLVTFSRDLDE-GVWMMMLRRPKESAAGSGLLAPFNNFVWYVTLASVLCY 139
I L V F+ E GV M++ + + L P +W T A +
Sbjct: 542 GDITILANRSLYVDFTLPYTESGVRMLVPVQDQRQKTAWTFLQPLTADLWLGTAAFFVLT 601
Query: 140 GPCICFLTHVRSKLIKNEERPL-RLSPSFWFVYSAFIKQSTNLAPEANTTRVLFATWWLF 198
G + F+ H ++ + P+ ++ F+F +S + N +RVL W
Sbjct: 602 GFVVWFIEHRTNEDFRGP--PVNQIGSVFYFAFSTLVFAHRQKIVN-NLSRVLLVIWLFV 658
Query: 199 IILLSAFYTANLTAFLTLSKFTLDIETPEDLYKKNYRWVSVEGGSVQYTVKTQDEDLYYL 258
+++L YTA+L++ LT+ + + +++ +K G +V Y D + L
Sbjct: 659 VLILQRSYTASLSSILTVEQLQPTVTNLDEVIRK--------GANVGY---LNDSFMPEL 707
Query: 259 NKMVTSGRAEFRTLSPDQEYLPIVKAG--AVLVKEMISLEHLMYGDYLTKTREGVEEAKR 316
K + ++ L EY + G AV+V E+ L+ + +K
Sbjct: 708 LKRLKIDESKLIALDSPDEYNEALSTGRVAVVVDEIPYLKVFL--------------SKY 753
Query: 317 C-TYVVAPKPFMKKPRAFVYPVGSKLKSLFDPTLAYILQSGIIDYLEHKDLPSTTICPLD 375
C Y + + F +P+GS L + + S + LE ++L + CP
Sbjct: 754 CHNYTMVGPTYKFDGFGFAFPLGSPLTAEISRGILNFTSSNRMAQLE-RELYNNRTCP-- 810
Query: 376 LQSKDRQLTNSHLMMTYYI---MCVGLASGLAVFV 407
KD T+S L + ++ + G +S LA+F+
Sbjct: 811 --DKDDSQTSSSLTLRSFLGLFIITGASSLLALFL 843
>04_04_0940 -
29539138-29539626,29540125-29540531,29540631-29540662,
29540809-29541086,29541164-29542515,29542616-29542874
Length = 938
Score = 51.2 bits (117), Expect = 2e-06
Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 5/176 (2%)
Query: 51 IPHRNFEIGGSKPEDSLIGLTN---TSKVDMIAAFIPRLVRFRKLVTFSRDLDEGVWMMM 107
+P+R G ++ S L N T D + + + K+V F++ +++
Sbjct: 511 VPYRFVPFGNNRENPSYSELINKIITDDFDAVVGDVTIITNRTKVVDFTQPYVSSGLVVL 570
Query: 108 LRRPKESAAGSGLLAPFNNFVWYVTLASVLCYGPCICFLTHVRSKLIKNEERPLRLSPSF 167
++++ G L PF +W VT L G + L H + + +L F
Sbjct: 571 TSVKRQNSGGWAFLQPFTIKMWTVTGLFFLIIGTVVWMLEHRINDEFRGPPAK-QLITVF 629
Query: 168 WFVYSAFIKQSTNLAPEANTTRVLFATWWLFIILLSAFYTANLTAFLTLSKFTLDI 223
WF +S + R + W ++++ + YTA+LT+ LT+ + T I
Sbjct: 630 WFSFSTLFFAHRE-DTRSTLGRFVIIIWLFVVLIIQSSYTASLTSILTVQQLTSPI 684
>02_05_1011 +
33487670-33487958,33490794-33492100,33492541-33492853,
33493190-33494247
Length = 988
Score = 50.0 bits (114), Expect = 4e-06
Identities = 34/169 (20%), Positives = 73/169 (43%), Gaps = 3/169 (1%)
Query: 65 DSLIGLTNTSKVDMIAAFIPRLVRFRKLVTFSRDLDEGVWMMMLRRPKESAAGSGL-LAP 123
+ L+ ++ K D + + + V F+ E W M++ KE++ + L P
Sbjct: 523 EKLVDQVSSQKADAVVGDVTITASRMEEVDFTMPFTESGWSMVVAVQKETSTSMWIFLQP 582
Query: 124 FNNFVWYVTLASVLCYGPCICFLTHVRSKLIKNEERPLRLSPSFWFVYSAFIKQSTNLAP 183
+W +LA G + + H ++ + + F+F +S +
Sbjct: 583 LTTSLWLASLAFFCFTGFVVWVIEHRINEEFRGTPWQ-QFGLIFYFSFSTLVFSHKEKL- 640
Query: 184 EANTTRVLFATWWLFIILLSAFYTANLTAFLTLSKFTLDIETPEDLYKK 232
E+N +R + W +++L++ YTA+LT+ LT+ K + +L ++
Sbjct: 641 ESNLSRFVVIIWVFVVLILTSSYTASLTSMLTVQKLQPTVTDVRELLRR 689
>07_01_0026 + 190568-190829,192475-194534,194620-195168
Length = 956
Score = 48.4 bits (110), Expect = 1e-05
Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 6/136 (4%)
Query: 91 KLVTFSRD-LDEGVWMMMLRRPKESAAGSGLLAPFNNFVWYVTLASVLCYGPCICFLTHV 149
++V F++ ++ G+ ++ R + S+A + L PF +W VT L G + L H
Sbjct: 557 RVVDFTQPYVESGLVIVTAVRERASSAWA-FLKPFTREMWAVTGGFFLFVGAVVWVLEHR 615
Query: 150 RSKLIKNEERPLRLSPSFWFVYSA-FIKQSTNLAPEANTTRVLFATWWLFIILLSAFYTA 208
+ + R +L FWF +S F N + R++ W ++++++ YTA
Sbjct: 616 SNTDFRGSPRK-QLVTVFWFSFSTMFFAHRENTV--STLGRLVLIIWLFVVLIINSSYTA 672
Query: 209 NLTAFLTLSKFTLDIE 224
+LT+ LT+ + + I+
Sbjct: 673 SLTSILTVQQLSTGIQ 688
>06_03_1142 +
27961999-27962263,27963735-27965080,27965158-27965435,
27965706-27965737,27965830-27966236,27966373-27966858
Length = 937
Score = 47.6 bits (108), Expect = 2e-05
Identities = 34/160 (21%), Positives = 68/160 (42%), Gaps = 4/160 (2%)
Query: 65 DSLIGLTNTSKVDMIAAFIPRLVRFRKLVTFSRDLDEGVWMMMLRRPKESAAGSGLLAPF 124
D +I + + +D + K+ FS+ E ++++ + S++ L PF
Sbjct: 528 DDIINMVAANSLDAAVGDFAIVRNRTKIAEFSQPYIESGLVIVVPVKEASSSAWAFLKPF 587
Query: 125 NNFVWYVTLASVLCYGPCICFLTHVRSKLIKNEERPLRLSPSFWFVYSA-FIKQSTNLAP 183
+W VT + G + L H ++ + R ++ FWF +S F N
Sbjct: 588 TLEMWCVTGVLFIFVGIVVWILEHRTNEEFRGSPR-RQMITIFWFSFSTMFFAHRQNTVS 646
Query: 184 EANTTRVLFATWWLFIILLSAFYTANLTAFLTLSKFTLDI 223
R + W ++++++ YTA+LT+ LT+ + I
Sbjct: 647 ALG--RFVLIIWLFVVLIINSSYTASLTSILTVQQLATGI 684
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 38.7 bits (86), Expect = 0.011
Identities = 44/211 (20%), Positives = 84/211 (39%), Gaps = 19/211 (9%)
Query: 197 LFIILLSAFYTANLTAFLTLSKFTLDIETPEDLYKKNYRWVSVEGGSVQYTVKTQDEDLY 256
LF ++ YTA+LT+ LT+ + I +DL KN G + + V + E+
Sbjct: 606 LFNLVFCTHYTASLTSILTVQQLDTSIRGIDDL--KN------SDGPIGFQVGSFAEE-- 655
Query: 257 YLNKMVTSGRAEFRTLSPDQEYLPIVKAGAVLVKEMISLEHLMYGDYLTKTREGVEEAKR 316
Y+ + + R+ R L +EY +K G M ++ Y + T
Sbjct: 656 YMVRELNISRSRLRALGSPEEYAEALKHGPKRGGVMAIVDERPYVELFLST--------Y 707
Query: 317 CTYVVAPKPFMKKPRAFVYPVGSKLKSLFDPTLAYILQSGIIDYLEHKDLPSTTICPLDL 376
C VA F + F +P S L+ + + ++G + + K L ++ +
Sbjct: 708 CKIAVAGSDFTSRGWGFAFPRDSPLQIDLSTAILSLSENGELQRIHDKWLKTSECSADNT 767
Query: 377 QSKDRQLTNSHLMMTYYIMCVGLASGLAVFV 407
+ D +++C G+A +A+ +
Sbjct: 768 EFVDSDQLRLESFWGLFLIC-GIACVIALLI 797
>09_04_0195 -
15509412-15509580,15510136-15510467,15510494-15510900,
15511467-15511581,15512711-15514044,15514558-15514819
Length = 872
Score = 35.5 bits (78), Expect = 0.098
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 188 TRVLFATWWLFIILLSAFYTANLTAFLTLSKFTLDIETPEDLYKKNYRWVSVEGGS 243
+R++ W FI++L + YTA+LT+ LT+ + +L KN ++ GS
Sbjct: 579 SRIVLVVWLFFILVLKSSYTASLTSMLTVQQLQPTAHDVHELL-KNGEYIGCGSGS 633
>09_04_0213 + 15706638-15707915
Length = 425
Score = 34.7 bits (76), Expect = 0.17
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 121 LAPFNNFVWYVTLASVLCYGPCICFLTHVRSKLIKNEERPLRLSPSFWFVYSAFIKQSTN 180
L P +W + A +L G + F+ H + + +L +F +S +
Sbjct: 42 LKPLRYDLWLASAAFLLLTGFAVWFVEHRGNAEFRGPPWH-QLGTLLYFGFSTLVFAHRE 100
Query: 181 LAPEANTTRVLFATWWLFIILLSAFYTANLTAFLTLSK 218
+N R+ W+ +++L + YTA+LT+ LT+ +
Sbjct: 101 DL-RSNLARLAAVVWFFVVLILQSSYTASLTSMLTVPR 137
>09_04_0204 -
15565684-15566223,15567272-15567678,15568143-15568446,
15568735-15570065,15570769-15570846,15570943-15571027
Length = 914
Score = 33.9 bits (74), Expect = 0.30
Identities = 28/125 (22%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 125 NNFVWYVTLASVLCYGPCICFL-THVRSKLIKNEERPLRLSPSFW-----FVYSAFIKQS 178
N +V+ L + L +G F+ T + L++ L+ SF+ +Y +F
Sbjct: 541 NTWVFLKPLTTDLWFGSIAFFIYTAIVIWLLERRINNAELTGSFFRQLGIAIYFSFFADR 600
Query: 179 TNLAPEANTTRVLFATWWLFIILLSAFYTANLTAFLTLSKFTLDIETPEDLYKKNYRWVS 238
+ ++ +R++ W ++++++ YTANL++ LT+ + + +L KN +V
Sbjct: 601 ERV--DSILSRLVVIVWVFVLLVITSSYTANLSSMLTVQQLQPTVTDVHELL-KNGEYVG 657
Query: 239 VEGGS 243
GS
Sbjct: 658 YHNGS 662
>09_04_0199 -
15533619-15534107,15534956-15535362,15535559-15535862,
15537061-15538397,15539463-15539727
Length = 933
Score = 33.5 bits (73), Expect = 0.39
Identities = 32/145 (22%), Positives = 67/145 (46%), Gaps = 8/145 (5%)
Query: 100 DEGVWMMMLRRPKESAAGSGLLAPFNNFVWYVTLASVLCYGPCICFLTHVRSKLIKNEER 159
+ GV M++ R + L P +W+ ++A + Y + +L RS +
Sbjct: 561 ESGVAMIVPVRDDRNKNTWVFLKPLTTDLWFGSIAFFV-YTAIVIWLLERRSNNAELTGS 619
Query: 160 PLR-LSPSFWFVYSAFIKQSTNLAPEANTTRVLFATWWLFIILLSAFYTANLTAFLTLSK 218
LR L + +F + A ++ ++ +R++ W ++++++ YTANL++ LT+ +
Sbjct: 620 FLRQLGIAIYFSFFADRERVDSIL-----SRLVVIVWVFVLLVITSSYTANLSSMLTVQQ 674
Query: 219 FTLDIETPEDLYKKNYRWVSVEGGS 243
+ +L KN +V GS
Sbjct: 675 LQPTVTDVHELL-KNGEYVGYPNGS 698
>06_01_0616 +
4467439-4467733,4469232-4469294,4469840-4471176,
4472719-4473086,4473526-4473559,4473978-4474421
Length = 846
Score = 33.1 bits (72), Expect = 0.52
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 184 EANTTRVLFATWWLFIILLSAFYTANLTAFLTLSKFTLDIETPEDLYKKNYRWVSVEGGS 243
E+N ++++ W +++++ YTANLT+ LT+ + T +L K +Y +G
Sbjct: 569 ESNLSKLVVIVWVFTVLIITTSYTANLTSMLTVGQLQ---PTINELKKGDYVGYQ-QGSF 624
Query: 244 VQYTVK 249
VQ +K
Sbjct: 625 VQNILK 630
>09_04_0203 -
15556064-15556561,15557537-15557581,15557852-15558258,
15558538-15558841,15559421-15560757,15561492-15561750
Length = 949
Score = 32.7 bits (71), Expect = 0.69
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 125 NNFVWYVTLASVLCYGPCICFL-THVRSKLIKNEERPLRLSPSFW-----FVYSAFIKQS 178
N +V+ L + L +G F+ T V L++ L+ SF+ +Y +F
Sbjct: 575 NTWVFLKPLTTGLWFGSIAFFIYTAVVIWLLERRINNAELTGSFFRQLGIAIYFSFFADR 634
Query: 179 TNLAPEANTTRVLFATWWLFIILLSAFYTANLTAFLTLSKFTLDIETPEDLYKKNYRWVS 238
+ ++ +R++ W ++++++ YTANL++ LT+ + + +L K +V
Sbjct: 635 ERV--DSILSRLVVIVWVFVLLVITSSYTANLSSMLTVQQLQPTVTDIHELLKSG-EYVG 691
Query: 239 VEGGS 243
GS
Sbjct: 692 YRNGS 696
>05_02_0149 + 7107830-7108095,7109115-7109229,7109917-7110117
Length = 193
Score = 29.1 bits (62), Expect = 8.5
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 154 IKNEERPLRLSPSFWFVYSAFIKQSTNLAPEANTTRVLFATWWLFIILLSAFYTANLT 211
+KN LS +F+F + K+S ++ P AN T F W+ + L+ T N +
Sbjct: 82 LKNNGPKSNLSYTFFFAKTPLYKESMSIPPYANQT--FFGLEWITMSLVVPLPTKNFS 137
>04_01_0476 +
6215401-6217445,6217538-6217630,6218031-6218133,
6218237-6218254
Length = 752
Score = 29.1 bits (62), Expect = 8.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 456 KFKDSEKRWKMINGREYYVYEDARGG----TRLVPVRTP 490
KFK EK W+ +NGR+ + E G RL VR P
Sbjct: 429 KFKLDEKHWETVNGRKLWQIEQKEDGIMPALRLSYVRLP 467
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.138 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,375,285
Number of Sequences: 37544
Number of extensions: 583945
Number of successful extensions: 1021
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1010
Number of HSP's gapped (non-prelim): 16
length of query: 496
length of database: 14,793,348
effective HSP length: 85
effective length of query: 411
effective length of database: 11,602,108
effective search space: 4768466388
effective search space used: 4768466388
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)
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