Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001026-TA|BGIBMGA001026-PA|IPR001320|Ionotropic
glutamate receptor
(496 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11) 77 2e-14
SB_15542| Best HMM Match : Lig_chan (HMM E-Value=0) 69 9e-12
SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0) 65 1e-10
SB_44957| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 2e-09
SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.014
SB_9731| Best HMM Match : Lig_chan (HMM E-Value=3.7e-05) 38 0.014
SB_35425| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.057
SB_3063| Best HMM Match : Lig_chan (HMM E-Value=5.4e-13) 33 0.40
SB_14385| Best HMM Match : ANF_receptor (HMM E-Value=6.5e-35) 32 0.92
SB_34819| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_10839| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.6
>SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)
Length = 1171
Score = 77.4 bits (182), Expect = 2e-14
Identities = 68/269 (25%), Positives = 119/269 (44%), Gaps = 29/269 (10%)
Query: 19 ERDEN-GTVQAYGVAFKIIDILQQKFNFTYEIVIPHRNFEIGGSKPEDSLIGL---TNTS 74
E+D G V+ G + ++DIL F YEI + + E+GG K + + GL +
Sbjct: 8 EKDPTTGAVKYTGHSIDLLDILAGMNGFQYEI---YESAELGGVKEDGTYYGLFGDIQSE 64
Query: 75 KVDMIAAFIPRLVRFRKL--VTFSRDLDEGVWMMMLRRPKESAAG-SGLLAPFNNFVWYV 131
K D+ +P + +L + FS ++ R+P+E +G + P+ VW +
Sbjct: 65 KADLTT--LPLTINSARLQYLDFSEPFMHVSMDLVTRKPEEKQIDITGFMTPYTIPVWLM 122
Query: 132 TLASVLCYGPCICFLTHV-----RSKLIKNEERPLRLSPSFWFVYSAFIKQSTNLAPEAN 186
T+A + C+ + + R + + + S WF ++ ++Q + P+
Sbjct: 123 TMACWIFVTGCLSLVNYYSPYGHRLRDTEGDGDEFSFFNSLWFCLASMLQQGGDATPKML 182
Query: 187 TTRVLFATWWLFIILLSAFYTANLTAFLTLSKFTLDIETPEDLYKKNYRWVSVEGGSVQY 246
+ R++ T W I++ + YTANL AFLT S I ED+ K Y Y
Sbjct: 183 SGRIVTGTLWFVILVWVSTYTANLAAFLTTSSSDSAINNLEDVLDKEYN---------LY 233
Query: 247 TVKTQDEDLYYLNKMVTSGRAEFRTLSPD 275
K + +N ++ G E+R L+PD
Sbjct: 234 ITKV---IMSTVNSLLMVGNYEYRKLTPD 259
Score = 37.9 bits (84), Expect = 0.019
Identities = 20/74 (27%), Positives = 34/74 (45%)
Query: 183 PEANTTRVLFATWWLFIILLSAFYTANLTAFLTLSKFTLDIETPEDLYKKNYRWVSVEGG 242
P + + RVL +W I++ + YTANL AF T+ + T ED+ Y + +
Sbjct: 1045 PRSLSGRVLAGCFWFCILIWISTYTANLAAFFTVRSAGKTVSTLEDVVDGGYHFYIIRHT 1104
Query: 243 SVQYTVKTQDEDLY 256
++ + K Y
Sbjct: 1105 ALYHFFKMASYHTY 1118
>SB_15542| Best HMM Match : Lig_chan (HMM E-Value=0)
Length = 729
Score = 68.9 bits (161), Expect = 9e-12
Identities = 58/239 (24%), Positives = 104/239 (43%), Gaps = 13/239 (5%)
Query: 30 GVAFKIIDILQQKFNFTYEIVIPH-RNFEIGGSKPEDSLIGLTNTSKVDMIAAFIPRLVR 88
G +I+ L F YEI + N+ + ++G K DM A I
Sbjct: 189 GFLIDVINELSTVVGFEYEIDLRRDTNYASMVNGRVTGMVGDLIDKKADMALAPITITAE 248
Query: 89 FRKLVTFSRDLDEGVWMMMLRRPKESAAGS-GLLAPFNNFVWYVTLASVLCYGPCICFLT 147
+ FS+ + + ++++ KE + PF+ VW + + VL + + F+
Sbjct: 249 RESKIDFSKPFMDFMQSLIMKEMKEEEISLFAFVQPFDGTVWLLIIVVVL-FVTIMMFVV 307
Query: 148 HVRSKLIKNEERPL---------RLSPSFWFVYSAFIKQSTNLAPEANTTRVLFATWWLF 198
+ S E + L S WF ++ ++Q + P++ + R+L + +W F
Sbjct: 308 DLWSPFGHRAEARITDEGAGDEFNLFNSLWFATASMLQQGPDNTPKSPSGRILASAFWFF 367
Query: 199 IILLSAFYTANLTAFLTLSKFTLDIETPEDLYK-KNYRWVSVEGGSVQYTVKTQDEDLY 256
I+++ + YTANL AF T IET +DL K K + ++GGS+ + + LY
Sbjct: 368 ILIIISTYTANLAAFFTKKTSKNFIETLDDLTKQKKISYGCLKGGSMASFFEKSNNPLY 426
>SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0)
Length = 771
Score = 65.3 bits (152), Expect = 1e-10
Identities = 60/233 (25%), Positives = 101/233 (43%), Gaps = 13/233 (5%)
Query: 24 GTVQAYGVAFKIIDILQQKFNFTYEIVIPHRNFEIGGSKPED--SLIGLTNTSKVDMIAA 81
G + G + ++D+L +K N YEI I G K + ++G + D+
Sbjct: 430 GNDRFMGFSKDLLDLLAEKLNVKYEIRISKEK-SYGSVKNGEWRGILGELVRQEADIAIG 488
Query: 82 FIPRLVRFRKLVTFSRDLDEGVWMMMLRRPKESAAGS-GLLAPFNNFVW----YVTLASV 136
I +++ FS+ + M+L++P E L PF +W V A
Sbjct: 489 PITITAEREQVIDFSKPFLDFRIAMILQKPLEEDVDLFAFLMPFQKDLWACCCLVVGAVT 548
Query: 137 LCYGPCICFLTHVRSKLIKN----EERPLRLSPSFWFVYSAFIKQSTNLAPEANTTRVLF 192
+ F + KN E L S WF + ++Q + P + + RVL
Sbjct: 549 ILMWILDRFSPYGFRAEAKNTGEGEGDEFSLPNSLWFATGSILQQGGDNTPRSGSGRVLA 608
Query: 193 ATWWLFIILLSAFYTANLTAFLTLSKFTLDIETPEDLYKKN-YRWVSVEGGSV 244
A++WLF ++L + YTANL AF T I + EDL ++ +++ +GGS+
Sbjct: 609 ASFWLFTLILISTYTANLAAFFTAQNSKSTINSLEDLVAQDVFKYGVQQGGSL 661
>SB_44957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1336
Score = 61.3 bits (142), Expect = 2e-09
Identities = 70/319 (21%), Positives = 128/319 (40%), Gaps = 21/319 (6%)
Query: 112 KESAAGSGLLAPFNNFVWYVTLASVLCYGPCICFLTHV----RSKLIKNE--ERPLRLSP 165
++S + L PF +W + L SV + L R KL + E E L LS
Sbjct: 13 EQSNSLDSFLRPFQIHLWLLVLLSVHIVAVILYLLDRFSPFGRFKLARKEKEETALNLSS 72
Query: 166 SFWFVYSAFIKQSTNLA-PEANTTRVLFATWWLFIILLSAFYTANLTAFLTLSK---FTL 221
+ WF + + P + + RVL W F +++ A YTANL AFL L +
Sbjct: 73 AMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLDRPKAVVS 132
Query: 222 DIETPEDLYKKNYRWVSVEGGSVQYTVKTQDEDLYYLNKMVTSGRAEF-RTLSPDQEYLP 280
I+ P L +Y + + + ++ + Y +S A F R + Y
Sbjct: 133 GIDDPNGL-DTSYLLAPLP-LMIMFQLRNPSKQFIYATVANSSVDAYFRRQVELSSMYTF 190
Query: 281 IVKAGAVLVKEMISLEHLMYGDYLTKTREG----VEEAKRCTYVVAPKPFMKKPRAFVYP 336
+ KE +E + G+ + E +K CT A + F + P
Sbjct: 191 MEGYNVKTAKE--GIEKVKNGELKAFIWDSPVLYYEASKDCTLTTAGELFGRSGYGIGMP 248
Query: 337 VGSKLKSLFDPTLAYILQSGIIDYLEHKDLPSTTICPLDLQSKDRQLTNSHLMMTYYIMC 396
GS + + +SG+++ LE + ++ C + + L H++ + ++
Sbjct: 249 KGSPWSNAISLAILNFHESGVMEELETTWIDASK-CNTE-NTSPATLGLQHMLGVFIMVA 306
Query: 397 VGLASGLAVFVVEILVKRY 415
G+ +G+ + ++EIL ++
Sbjct: 307 AGIGAGIVIIILEILYHKH 325
>SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1837
Score = 38.3 bits (85), Expect = 0.014
Identities = 44/197 (22%), Positives = 89/197 (45%), Gaps = 12/197 (6%)
Query: 65 DSLIGLTNTSKVDMIAAFIPRLVRFRKLVTFSRDLDE-GVWMMMLR-RPKESAAGSGLLA 122
++L+G + D+ AA I K V ++ + + ++++M + R K S +
Sbjct: 601 NNLVGEVVLGRADLAAAPIAITNARLKDVEYASPIQQLEIYIVMSQNRAKISLDWLAFIR 660
Query: 123 PFNNFVWYVTLASVLCYGPCICFLTHVR-----SKLIKNEERPLRLSPSFWFVYSAFIKQ 177
PF+N +W+V I ++ +K I ++ L SF +V+S+ K
Sbjct: 661 PFDNSLWFVIFGLSFALVFYIWWMDQWSPYGRDNKKILSDPSNFTLPVSFSYVFSSVFKI 720
Query: 178 STN-LAPEANTTRVLFATWWLFIILLSAFYTANLTAFLT--LSKFTLDIETPEDLYKKN- 233
+ + + + + R +A + +++ + YTANLTA L L F + E N
Sbjct: 721 NLDDVTARSPSARFTYAVFSFGTLIMVSSYTANLTASLVQELQTFPISGIYDEKFQDPNS 780
Query: 234 -YRWVSVEGGSVQYTVK 249
+ + + +G SV++ +K
Sbjct: 781 GFTFATEKGASVEFLLK 797
>SB_9731| Best HMM Match : Lig_chan (HMM E-Value=3.7e-05)
Length = 435
Score = 38.3 bits (85), Expect = 0.014
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 196 WLFIILLSAFYTANLTAFLTLSKFTLDIETPEDLYKKNYRWVSVEGGSVQYTVKTQDEDL 255
W I + A YTANL AFLT++K+ I++ EDL + G + +KT +
Sbjct: 2 WFAISIFGATYTANLAAFLTVNKYEHPIKSIEDLADQQGIAYGTAPGQLAEMLKTASLPV 61
Query: 256 Y 256
Y
Sbjct: 62 Y 62
>SB_35425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 996
Score = 36.3 bits (80), Expect = 0.057
Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 19/239 (7%)
Query: 177 QSTNLAPEANTTRVLFATWWLFIILLSAFYTANLTAFLTLSKFTLDIETPEDLYKKNYRW 236
++T P A + FA ++ +IL++ Y ANLTAFL L I ED +
Sbjct: 650 ENTPRGPSARFVSIFFA--FMALILVNT-YCANLTAFLLEDNVVLPISGVEDRKLLDTSL 706
Query: 237 VSVEGGSVQYTVKTQDEDLYYLNKMVTSGRAEFRTLSPDQEYLPIVKA---GAVLVKEMI 293
+G + V+ E+ ++ N + E + L + +VK G L+++
Sbjct: 707 YPPDGFQLG-VVQGSFEEAFFKN----HNKKELQLLYNVNIKINLVKGMNEGFDLLQKG- 760
Query: 294 SLEHLMYGDYLTKTREGVEEAKRCTYVVAPKPFMKKPRAFVYPVGSKLKSLFDPTLAYIL 353
L+ L+ + +++ V++ C + + K F AF +P GS S ++
Sbjct: 761 KLDGLVGDEVSLQSQANVDD---CKFSLIKKSFYNLGVAFAFPKGSPWASEATLSVLKNQ 817
Query: 354 QSGIIDYLEHKDLPSTTICPLDLQSKDRQLTNSHLMMTYYIMCVGLASGLAVFVVEILV 412
++G +D + P T C K S L +T I+ +A GL + E++V
Sbjct: 818 ENGTLDQIRKLRFPKNT-CQKQSVRKFGIADFSGLFVTVVIV---IAFGLLAVIFEVIV 872
>SB_3063| Best HMM Match : Lig_chan (HMM E-Value=5.4e-13)
Length = 880
Score = 33.5 bits (73), Expect = 0.40
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 148 HVRSKLIKNEERPLRLSPSFWFVYSA-FIKQSTNLAPEANTTRVLFATWWLFIILLSAFY 206
H +K + +R L S W+ + F Q P A ++R + F +L Y
Sbjct: 581 HQINKRSVDNKRHFELDGSMWYCWGVCFDNQFVEQRPAAYSSRAMSVCLATFALLCLTSY 640
Query: 207 TANLTAFL 214
TANLTA L
Sbjct: 641 TANLTAHL 648
>SB_14385| Best HMM Match : ANF_receptor (HMM E-Value=6.5e-35)
Length = 1003
Score = 32.3 bits (70), Expect = 0.92
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 139 YGPCICFLTHVRSKLIKNEERPLRLSPSFWFVYSAFIKQSTN-LAPEANTTRVLFATWWL 197
YG C+ + K ++ L S W + ++ Q + P + + R A WW
Sbjct: 513 YGRCVQSINKRVKKSYLKQKYSLSFLNSIWSSAAYYLGQGPDGNHPVSASGRAAVAVWWF 572
Query: 198 FIILLSAFYTA 208
I +L A YTA
Sbjct: 573 VITILGATYTA 583
>SB_34819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 29.5 bits (63), Expect = 6.5
Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 1/112 (0%)
Query: 216 LSKFTLDIETPEDLYKKNYRWVSVEGGSVQYTVK-TQDEDLYYLNKMVTSGRAEFRTLSP 274
LS ++++E P L +Y WV + + K + + + L +T GR E +
Sbjct: 131 LSNSSINVELPASLASAHYLWVFPQISCCWRSKKHRRPKQVNQLETGLTQGRTETTQIEV 190
Query: 275 DQEYLPIVKAGAVLVKEMISLEHLMYGDYLTKTREGVEEAKRCTYVVAPKPF 326
DQ++ + + ++ + G + + R + RC + P F
Sbjct: 191 DQKFTDVCDTAHINTAASMNELQCIQGLEVYRVRSLLAGGTRCYHRGKPAQF 242
>SB_10839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 29.1 bits (62), Expect = 8.6
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 214 LTLSKFTLDIETPEDLYKKNYRWVSVEGGSVQYTVKTQDEDLYYLNKMVTS 264
L +S D +T ED+ K + ++ + G V YT K ED+ Y K++ +
Sbjct: 41 LEISATVEDRDTAEDMTYKR-KLIAADVGWVSYTDKDTAEDMTYKRKLIAA 90
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.323 0.138 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,310,777
Number of Sequences: 59808
Number of extensions: 647461
Number of successful extensions: 1089
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1073
Number of HSP's gapped (non-prelim): 17
length of query: 496
length of database: 16,821,457
effective HSP length: 85
effective length of query: 411
effective length of database: 11,737,777
effective search space: 4824226347
effective search space used: 4824226347
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -