GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001026-TA|BGIBMGA001026-PA|IPR001320|Ionotropic
glutamate receptor
         (496 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    79   8e-17
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   4.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   4.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   4.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   4.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   5.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   7.7  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 79.0 bits (186), Expect = 8e-17
 Identities = 93/404 (23%), Positives = 164/404 (40%), Gaps = 32/404 (7%)

Query: 30  GVAFKIIDILQQKFNFTYEIVIPH---------RNFEIGGSKPEDSLIGLTNTSKVDMIA 80
           G    ++  L +  NFTY + +           +N  +GG K    LIG     + DMI 
Sbjct: 461 GYCMDLLKELSKTINFTYSLALSPDGQFGNYIIKNNSVGGKKEWTGLIGELVNERADMIV 520

Query: 81  AFIPRLVRFRKLVTFSRDLDEGVWMMMLRRPKESAAGSGLLAPFNNFVWYVTLASVLCYG 140
           A +       + + FS+        ++ ++P  S+     L PF+N +W + + SV    
Sbjct: 521 APLTINPERAEFIEFSKPFKYQGITILEKKPSRSSTLVSFLQPFSNTLWILVMVSVHVVA 580

Query: 141 PCICFLTHV----RSKLIK---NEERPLRLSPSFWFVYSAFIKQSTNL-APEANTTRVLF 192
             +  L       R KL      EE  L LS + WF +   +        P + + RVL 
Sbjct: 581 LVLYLLDRFSPFGRFKLANTDGTEEDALNLSSAVWFAWGVLLNSGIGEGTPRSFSARVLG 640

Query: 193 ATWWLFIILLSAFYTANLTAFLTLSKFTLDIETPEDLYKKNYRWVSVEGGSVQYTVKTQD 252
             W  F +++ A YTANL AFL L +    +    D   +N    ++E  +   TVK   
Sbjct: 641 MVWAGFAMIIVASYTANLAAFLVLERPKTKLTGINDARLRN----TMENLTCA-TVKGSA 695

Query: 253 EDLYYLNKMVTSGRAEFRTLSPDQEYLPIVKAGAVLVKEMISLEHLMYGDYLTKTREGVE 312
            D+Y+  ++  S    +RT+  +  Y    +A    +++ I +  LM       +R   E
Sbjct: 696 VDMYFRRQVELSNM--YRTMEAN-NYDTAEEA----IRD-IKIGKLM-AFIWDSSRLEFE 746

Query: 313 EAKRCTYVVAPKPFMKKPRAFVYPVGSKLKSLFDPTLAYILQSGIIDYLE-HKDLPSTTI 371
            A+ C  V A + F +         GS         +    +SG ++ L+ H  L S   
Sbjct: 747 AAQDCELVTAGELFGRSGYGIGLQKGSLWADAVTLAILDFHESGFMESLDNHWILRSNVQ 806

Query: 372 CPLDLQSKDRQLTNSHLMMTYYIMCVGLASGLAVFVVEILVKRY 415
               L+     L   ++   + ++ VG+  G+ + ++E+  K++
Sbjct: 807 QCEQLEKAPNTLGLKNMAGVFIVVGVGIIGGIGLIIIEVAYKKH 850


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 155 KNEERPLRLSPSFWFVYSAFIKQSTNLAP 183
           KN+E  LR SPS   + +  IK  T   P
Sbjct: 219 KNDEGTLRKSPSLTSLNAYLIKNQTITCP 247


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 155 KNEERPLRLSPSFWFVYSAFIKQSTNLAP 183
           KN+E  LR SPS   + +  IK  T   P
Sbjct: 219 KNDEGTLRKSPSLTSLNAYLIKNQTITCP 247


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 155 KNEERPLRLSPSFWFVYSAFIKQSTNLAP 183
           KN+E  LR SPS   + +  IK  T   P
Sbjct: 270 KNDEGTLRKSPSLTSLNAYLIKNQTITCP 298


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 155 KNEERPLRLSPSFWFVYSAFIKQSTNLAP 183
           KN+E  LR SPS   + +  IK  T   P
Sbjct: 219 KNDEGTLRKSPSLTSLNAYLIKNQTITCP 247


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 144  CFLTHVRSKLIKNEERPLRLSPSFWFVYSAF 174
            C L   R++    ++ PLRL P +  V + +
Sbjct: 1444 CMLDKTRAQTFDGKDYPLRLGPCWHAVMTTY 1474


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 101 EGVWMMMLRRPKESAAGSGLLAPFNNFVWY 130
           +G+ + +   PK S   S  L P+ N+ W+
Sbjct: 208 DGIPVTLTTVPKHSKTKSPKLRPYPNWEWH 237


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.138    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,344
Number of Sequences: 429
Number of extensions: 6324
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 7
length of query: 496
length of database: 140,377
effective HSP length: 60
effective length of query: 436
effective length of database: 114,637
effective search space: 49981732
effective search space used: 49981732
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)