Silkworm BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001025-TA|BGIBMGA001025-PA|undefined
         (174 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071452-1|AAL49074.1|  173|Drosophila melanogaster RE53486p pro...   227   5e-60
AE014298-2478|AAF48664.1|  173|Drosophila melanogaster CG4756-PA...   227   5e-60
AY070570-1|AAL48041.1|  569|Drosophila melanogaster RE11315p pro...    30   1.5  
AL121806-8|CAB65884.1|  592|Drosophila melanogaster EG:BACR42I17...    30   1.5  
AE014298-159|AAF45591.2|  569|Drosophila melanogaster CG11380-PA...    30   1.5  
AE013599-3384|AAF46837.1|  775|Drosophila melanogaster CG10955-P...    29   3.5  
M74078-1|AAA28498.1|  878|Drosophila melanogaster ecdysone recep...    28   8.0  
BT015234-1|AAT94463.1|  878|Drosophila melanogaster RE06878p pro...    28   8.0  
BT012469-1|AAS93740.1|  878|Drosophila melanogaster RE33854p pro...    28   8.0  
AY075461-1|AAL68274.1|  872|Drosophila melanogaster RE16656p pro...    28   8.0  
AY058575-1|AAL13804.1|  492|Drosophila melanogaster LD26915p pro...    28   8.0  
AE013599-153|AAF57280.2|  878|Drosophila melanogaster CG1765-PB,...    28   8.0  
AE013599-152|AAM68347.1|  669|Drosophila melanogaster CG1765-PC,...    28   8.0  
AE013599-151|AAM68346.1|  849|Drosophila melanogaster CG1765-PE,...    28   8.0  
AE013599-150|AAG22334.2|  849|Drosophila melanogaster CG1765-PD,...    28   8.0  
AE013599-149|AAF57278.3|  849|Drosophila melanogaster CG1765-PA,...    28   8.0  

>AY071452-1|AAL49074.1|  173|Drosophila melanogaster RE53486p
           protein.
          Length = 173

 Score =  227 bits (556), Expect = 5e-60
 Identities = 103/170 (60%), Positives = 126/170 (74%)

Query: 1   MNNGFSTGEEDSRGNSDQICCLVDDGDRCRRPAGNASYSKRIQKTVALRRLKLNIDGQAR 60
           MNNGFSTGEEDSRG++DQ CCL+DD +RCR  AG ASYSKRIQKTVA +RLKL+ D  A+
Sbjct: 1   MNNGFSTGEEDSRGHTDQTCCLIDDMERCRNQAGYASYSKRIQKTVAQKRLKLSSDPAAQ 60

Query: 61  HTYICDYHKTMIQCARTKQRRTKXXXXXXXXXXXXXXXVDWFQLQVNTLRRYKRHYKVPT 120
           H YICD+HK  IQ  RTK+RR                  D +QL V+TLRRYKRH+KV T
Sbjct: 61  HIYICDHHKERIQSVRTKRRRKDSEDDSNETDTDLHEFPDLYQLGVSTLRRYKRHFKVQT 120

Query: 121 RPGLNKAQLADAVQKHFKSLPVNEREIMTYFIYMVKTNGNKLDQKNGMNN 170
           R G+ +AQLAD + KHFK++P+ E+EI+T+F+YMVK   NKLDQKNG+ N
Sbjct: 121 RQGMKRAQLADTIMKHFKTIPIKEKEIITFFVYMVKMGSNKLDQKNGLGN 170


>AE014298-2478|AAF48664.1|  173|Drosophila melanogaster CG4756-PA
           protein.
          Length = 173

 Score =  227 bits (556), Expect = 5e-60
 Identities = 103/170 (60%), Positives = 126/170 (74%)

Query: 1   MNNGFSTGEEDSRGNSDQICCLVDDGDRCRRPAGNASYSKRIQKTVALRRLKLNIDGQAR 60
           MNNGFSTGEEDSRG++DQ CCL+DD +RCR  AG ASYSKRIQKTVA +RLKL+ D  A+
Sbjct: 1   MNNGFSTGEEDSRGHTDQTCCLIDDMERCRNQAGYASYSKRIQKTVAQKRLKLSSDPAAQ 60

Query: 61  HTYICDYHKTMIQCARTKQRRTKXXXXXXXXXXXXXXXVDWFQLQVNTLRRYKRHYKVPT 120
           H YICD+HK  IQ  RTK+RR                  D +QL V+TLRRYKRH+KV T
Sbjct: 61  HIYICDHHKERIQSVRTKRRRKDSEDDSNETDTDLHEFPDLYQLGVSTLRRYKRHFKVQT 120

Query: 121 RPGLNKAQLADAVQKHFKSLPVNEREIMTYFIYMVKTNGNKLDQKNGMNN 170
           R G+ +AQLAD + KHFK++P+ E+EI+T+F+YMVK   NKLDQKNG+ N
Sbjct: 121 RQGMKRAQLADTIMKHFKTIPIKEKEIITFFVYMVKMGSNKLDQKNGLGN 170


>AY070570-1|AAL48041.1|  569|Drosophila melanogaster RE11315p
           protein.
          Length = 569

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/69 (27%), Positives = 31/69 (44%)

Query: 105 QVNTLRRYKRHYKVPTRPGLNKAQLADAVQKHFKSLPVNEREIMTYFIYMVKTNGNKLDQ 164
           +  TL+  K   K+ T         A A+ + F +LP ++ E +       K +GNK+  
Sbjct: 57  RATTLKPSKPRVKIGTSATTKSPTKAPALTETFGNLPADDLEFIKELDKQFKLHGNKIKI 116

Query: 165 KNGMNNSDS 173
           K   +NS S
Sbjct: 117 KVERDNSTS 125


>AL121806-8|CAB65884.1|  592|Drosophila melanogaster EG:BACR42I17.7
           protein.
          Length = 592

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/69 (27%), Positives = 31/69 (44%)

Query: 105 QVNTLRRYKRHYKVPTRPGLNKAQLADAVQKHFKSLPVNEREIMTYFIYMVKTNGNKLDQ 164
           +  TL+  K   K+ T         A A+ + F +LP ++ E +       K +GNK+  
Sbjct: 80  RATTLKPSKPRVKIGTSATTKSPTKAPALTETFGNLPADDLEFIKELDKQFKLHGNKIKI 139

Query: 165 KNGMNNSDS 173
           K   +NS S
Sbjct: 140 KVERDNSTS 148


>AE014298-159|AAF45591.2|  569|Drosophila melanogaster CG11380-PA
           protein.
          Length = 569

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/69 (27%), Positives = 31/69 (44%)

Query: 105 QVNTLRRYKRHYKVPTRPGLNKAQLADAVQKHFKSLPVNEREIMTYFIYMVKTNGNKLDQ 164
           +  TL+  K   K+ T         A A+ + F +LP ++ E +       K +GNK+  
Sbjct: 57  RATTLKPSKPRVKIGTSATTKSPTKAPALTETFGNLPADDLEFIKELDKQFKLHGNKIKI 116

Query: 165 KNGMNNSDS 173
           K   +NS S
Sbjct: 117 KVERDNSTS 125


>AE013599-3384|AAF46837.1|  775|Drosophila melanogaster CG10955-PA
           protein.
          Length = 775

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 118 VPTRPGLNKAQLADAVQKHFKSLPVNEREIMTYFIYM-VKTNGNK 161
           + TR  LNK +L+    + F +LP+ E  ++  F+ + +  NG K
Sbjct: 428 ITTREDLNKLRLSRYKMERFVNLPIFESTVLNCFVRISIGNNGQK 472


>M74078-1|AAA28498.1|  878|Drosophila melanogaster ecdysone receptor
           protein.
          Length = 878

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 121 RPGLNKAQLADAVQKHF 137
           RPGL KAQL +A+Q ++
Sbjct: 573 RPGLEKAQLVEAIQSYY 589


>BT015234-1|AAT94463.1|  878|Drosophila melanogaster RE06878p
           protein.
          Length = 878

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 121 RPGLNKAQLADAVQKHF 137
           RPGL KAQL +A+Q ++
Sbjct: 573 RPGLEKAQLVEAIQSYY 589


>BT012469-1|AAS93740.1|  878|Drosophila melanogaster RE33854p
           protein.
          Length = 878

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 121 RPGLNKAQLADAVQKHF 137
           RPGL KAQL +A+Q ++
Sbjct: 573 RPGLEKAQLVEAIQSYY 589


>AY075461-1|AAL68274.1|  872|Drosophila melanogaster RE16656p
           protein.
          Length = 872

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 121 RPGLNKAQLADAVQKHF 137
           RPGL KAQL +A+Q ++
Sbjct: 543 RPGLEKAQLVEAIQSYY 559


>AY058575-1|AAL13804.1|  492|Drosophila melanogaster LD26915p
           protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 121 RPGLNKAQLADAVQKHF 137
           RPGL KAQL +A+Q ++
Sbjct: 187 RPGLEKAQLVEAIQSYY 203


>AE013599-153|AAF57280.2|  878|Drosophila melanogaster CG1765-PB,
           isoform B protein.
          Length = 878

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 121 RPGLNKAQLADAVQKHF 137
           RPGL KAQL +A+Q ++
Sbjct: 573 RPGLEKAQLVEAIQSYY 589


>AE013599-152|AAM68347.1|  669|Drosophila melanogaster CG1765-PC,
           isoform C protein.
          Length = 669

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 121 RPGLNKAQLADAVQKHF 137
           RPGL KAQL +A+Q ++
Sbjct: 364 RPGLEKAQLVEAIQSYY 380


>AE013599-151|AAM68346.1|  849|Drosophila melanogaster CG1765-PE,
           isoform E protein.
          Length = 849

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 121 RPGLNKAQLADAVQKHF 137
           RPGL KAQL +A+Q ++
Sbjct: 544 RPGLEKAQLVEAIQSYY 560


>AE013599-150|AAG22334.2|  849|Drosophila melanogaster CG1765-PD,
           isoform D protein.
          Length = 849

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 121 RPGLNKAQLADAVQKHF 137
           RPGL KAQL +A+Q ++
Sbjct: 544 RPGLEKAQLVEAIQSYY 560


>AE013599-149|AAF57278.3|  849|Drosophila melanogaster CG1765-PA,
           isoform A protein.
          Length = 849

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 121 RPGLNKAQLADAVQKHF 137
           RPGL KAQL +A+Q ++
Sbjct: 544 RPGLEKAQLVEAIQSYY 560


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.320    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,290,490
Number of Sequences: 52641
Number of extensions: 296405
Number of successful extensions: 592
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 577
Number of HSP's gapped (non-prelim): 16
length of query: 174
length of database: 24,830,863
effective HSP length: 80
effective length of query: 94
effective length of database: 20,619,583
effective search space: 1938240802
effective search space used: 1938240802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)