Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001025-TA|BGIBMGA001025-PA|undefined
         (174 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19330.1 68414.m02403 expressed protein                             40   7e-04
At2g07630.1 68415.m00881 hypothetical protein                          29   1.3  
At3g31990.1 68416.m04051 hypothetical protein similar to putativ...    29   1.7  
At1g14900.1 68414.m01781 high-mobility-group protein / HMG-I/Y p...    27   5.3  
At5g51540.1 68418.m06391 peptidase M3 family protein / thimet ol...    27   7.0  
At1g77500.1 68414.m09025 expressed protein contains Pfam domains...    27   9.2  

>At1g19330.1 68414.m02403 expressed protein
          Length = 247

 Score = 40.3 bits (90), Expect = 7e-04
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 99  VDWFQLQVNTLRRYKRHYK-VPTRPGLNKAQLADAVQKHFKSLPVNEREIMTYFIYMVK 156
           VD  +L++  L  Y RH+  V   P  +K QL D VQ+HF S  ++E +++  F+   K
Sbjct: 167 VDLSKLEMPALLNYWRHFNLVDAIPNPSKEQLIDIVQRHFMSQQMDELQVIVGFVQAAK 225


>At2g07630.1 68415.m00881 hypothetical protein 
          Length = 458

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/37 (40%), Positives = 16/37 (43%)

Query: 107 NTLRRYKRHYKVPTRPGLNKAQLADAVQKHFKSLPVN 143
           N L RYK H KV    G  K  L DA+       P N
Sbjct: 304 NVLARYKLHVKVMDSSGEMKLMLFDAMSSEIVGCPAN 340


>At3g31990.1 68416.m04051 hypothetical protein similar to putative
           replication protein A1 GB:AAD32756 from [Arabidopsis
           thaliana]
          Length = 450

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/37 (40%), Positives = 16/37 (43%)

Query: 107 NTLRRYKRHYKVPTRPGLNKAQLADAVQKHFKSLPVN 143
           N L RYK H KV    G  K  L DA+       P N
Sbjct: 272 NVLARYKLHVKVMDSSGEMKLMLFDAMASEIVGCPAN 308


>At1g14900.1 68414.m01781 high-mobility-group protein / HMG-I/Y
           protein nearly identical to high-mobility-group protein
           HMG-I/Y protein [Arabidopsis thaliana] GI:1429211;
           contains Pfam profiles PF00538: linker histone H1 and H5
           family, PF02178: AT hook motif
          Length = 204

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/50 (24%), Positives = 24/50 (48%)

Query: 123 GLNKAQLADAVQKHFKSLPVNEREIMTYFIYMVKTNGNKLDQKNGMNNSD 172
           G NK  +A  ++   ++LP +   +++Y +  +K  G  +  KN     D
Sbjct: 42  GCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIMVKNNYMKPD 91


>At5g51540.1 68418.m06391 peptidase M3 family protein / thimet
           oligopeptidase family protein low similarity to
           SP|Q99797 Mitochondrial intermediate peptidase,
           mitochondrial precursor (EC 3.4.24.59) {Homo sapiens};
           contains Pfam profile PF01432: Peptidase family M3
          Length = 860

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 16  SDQICCLVDDGDRCRRPAGNASYSKRIQK 44
           SD +CC+VD  + CR+   +  + +   K
Sbjct: 80  SDTVCCVVDSAELCRQTHPDREFVEEANK 108


>At1g77500.1 68414.m09025 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 879

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 113 KRHYKVPTRPGLNKAQLADAVQKH--FKSLPVNEREI 147
           K+ Y+ P RPGL K +      KH  F    +N+RE+
Sbjct: 315 KQVYRRPKRPGLEKVKEHRDEHKHNVFPERNINKREV 351


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,902,518
Number of Sequences: 28952
Number of extensions: 133974
Number of successful extensions: 266
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 6
length of query: 174
length of database: 12,070,560
effective HSP length: 76
effective length of query: 98
effective length of database: 9,870,208
effective search space: 967280384
effective search space used: 967280384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)