GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001025-TA|BGIBMGA001025-PA|undefined
         (174 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3...    25   4.7  
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    25   6.2  

>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 101 WFQLQVNTLRRYKRHYKVPTRPGLNKAQLADAVQ 134
           W +   + L ++ R++   T  GLN+ QL   V+
Sbjct: 295 WLESDASLLDKHSRYFISDTGQGLNRVQLCPLVR 328


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 10/44 (22%), Positives = 21/44 (47%)

Query: 109 LRRYKRHYKVPTRPGLNKAQLADAVQKHFKSLPVNEREIMTYFI 152
           L  Y+R  +  T P L   +  +  ++    LP+  R+++ Y +
Sbjct: 143 LEYYERFREPMTIPNLTDNERVEMYRRRIDELPIPNRQLLLYLL 186


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 748,490
Number of Sequences: 5004
Number of extensions: 25268
Number of successful extensions: 35
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 2
length of query: 174
length of database: 2,362,478
effective HSP length: 68
effective length of query: 106
effective length of database: 2,022,206
effective search space: 214353836
effective search space used: 214353836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)