GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001025-TA|BGIBMGA001025-PA|undefined
         (174 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0083 + 10471648-10471806,10473261-10473343,10473384-104738...    41   6e-04
04_01_0344 + 4517730-4517918,4518212-4518359,4518454-4518569,451...    30   0.89 
04_04_0172 + 23290421-23290519,23291564-23291677,23291783-232918...    28   3.6  
08_02_0269 + 15087481-15087893,15087978-15088074,15089068-150891...    27   6.3  
04_04_0940 - 29539138-29539626,29540125-29540531,29540631-295406...    27   8.3  

>10_06_0083 +
           10471648-10471806,10473261-10473343,10473384-10473810,
           10475806-10475932,10476329-10476471,10476687-10476749,
           10476833-10476898,10477047-10477085
          Length = 368

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query: 99  VDWFQLQVNTLRRYKRHYKVPTRPGLNKAQLADAVQKHFKS 139
           VD  +L++  L RY RH+ +   P  ++ QL DAVQ+HF S
Sbjct: 315 VDLSKLEMTALWRYWRHFNLDASPNPSREQLVDAVQRHFVS 355


>04_01_0344 +
           4517730-4517918,4518212-4518359,4518454-4518569,
           4518917-4518979,4519084-4519152,4519317-4519352
          Length = 206

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 99  VDWFQLQVNTLRRYKRHYK-VPTRPGLNKAQLADAVQKHFKS 139
           V+  +L   TL RY +H+  V   P  +K QL   VQ+HF+S
Sbjct: 153 VNLTKLGTPTLWRYWKHFNLVSMNPNPSKEQLFHGVQQHFQS 194


>04_04_0172 +
           23290421-23290519,23291564-23291677,23291783-23291878,
           23291955-23292039,23292262-23292317,23292432-23292510,
           23292599-23292733,23292842-23293077,23293173-23293505
          Length = 410

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 8   GEEDSRGNSDQICCLVDDGDRCRRPAGNASYSKRIQKTVALRRLKLNIDGQARHTYICDY 67
           G++D+ G+ D +CC +  G        + +  +  +   AL  L  ++D + R   +   
Sbjct: 222 GDDDTNGHVDNLCCFIKPGVVLLSWTDDENDPQYQRSVDALSTLSKSVDAKGRQIEVVKI 281

Query: 68  H 68
           H
Sbjct: 282 H 282


>08_02_0269 +
           15087481-15087893,15087978-15088074,15089068-15089112,
           15089281-15089492,15090809-15090911,15091002-15091097,
           15091405-15091473,15093341-15093588,15093640-15093759,
           15093847-15094284,15094503-15094620,15095262-15095303,
           15097099-15097161,15097365-15097475,15097730-15097801,
           15097875-15097993,15099682-15099745,15100238-15101860
          Length = 1350

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 13/78 (16%)

Query: 2   NNGFSTGEE-DSRGNS-----DQICCLVDDGDR---CRRPAGNASYSK----RIQKTVAL 48
           NN  ST E+ D+ GN+     D IC + DDG +   C  P   + +++    R  K   L
Sbjct: 221 NNDDSTDEDTDTDGNATDDDTDMICAICDDGGKLLSCEGPCKRSFHARVKHGRKSKCRTL 280

Query: 49  RRLKLNIDGQARHTYICD 66
           R   + +  +   T++C+
Sbjct: 281 RFTSVELKLKESGTFLCE 298


>04_04_0940 -
           29539138-29539626,29540125-29540531,29540631-29540662,
           29540809-29541086,29541164-29542515,29542616-29542874
          Length = 938

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 110 RRYKRHYKVPTRPGLNKAQLADAVQK 135
           RR K  YK P RPG +  ++AD + K
Sbjct: 189 RRSKILYKAPFRPGASNNEIADVLIK 214


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,695,203
Number of Sequences: 37544
Number of extensions: 158860
Number of successful extensions: 248
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 5
length of query: 174
length of database: 14,793,348
effective HSP length: 77
effective length of query: 97
effective length of database: 11,902,460
effective search space: 1154538620
effective search space used: 1154538620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)