GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001025-TA|BGIBMGA001025-PA|undefined
         (174 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31710| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.1  
SB_23899| Best HMM Match : TNFR_c6 (HMM E-Value=7.1e-09)               27   8.5  

>SB_31710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 102 FQLQVNTLRRYKRHYKVPTRPGLNKAQLADA 132
           F L +   R Y R+Y+VP +PG N+   ADA
Sbjct: 153 FNLCLLPARGYVRNYRVPWKPGGNELSKADA 183


>SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/56 (23%), Positives = 26/56 (46%)

Query: 18  QICCLVDDGDRCRRPAGNASYSKRIQKTVALRRLKLNIDGQARHTYICDYHKTMIQ 73
           ++C L+DD ++C+    + S     +  V  R L +  +     T  CD  K +++
Sbjct: 469 EVCKLIDDSEKCKNVKISISQEAIAKWLVDNRVLSVAFESNLHQTQYCDRLKVVVE 524


>SB_23899| Best HMM Match : TNFR_c6 (HMM E-Value=7.1e-09)
          Length = 533

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 30  RRPAGNASYSKRIQKTVALRRLKLNIDGQARHTYICDYHKTMI 72
           RRP G+A+Y     + +   R  L    QAR T+ CDY+ T I
Sbjct: 409 RRPGGSATYE--FLEALVSERPDLTCL-QARDTFNCDYNGTWI 448


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,767,813
Number of Sequences: 59808
Number of extensions: 207855
Number of successful extensions: 460
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 458
Number of HSP's gapped (non-prelim): 3
length of query: 174
length of database: 16,821,457
effective HSP length: 77
effective length of query: 97
effective length of database: 12,216,241
effective search space: 1184975377
effective search space used: 1184975377
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)