GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001025-TA|BGIBMGA001025-PA|undefined
         (174 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039051-4|AAB94264.1|  539|Caenorhabditis elegans Hypothetical ...    28   4.2  
AC006834-4|AAF40012.1|  392|Caenorhabditis elegans Hypothetical ...    28   4.2  
U41011-9|AAA82292.1|  359|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AC006618-2|AAK68249.1|  340|Caenorhabditis elegans Glutamine syn...    27   9.6  

>AF039051-4|AAB94264.1|  539|Caenorhabditis elegans Hypothetical
           protein C14C6.6 protein.
          Length = 539

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 100 DWFQLQVNTLRRYKRHYKVPTRPGLNKAQLADAV 133
           DW Q++ +T+   K+H+++     +N A L  A+
Sbjct: 106 DWNQIRTSTITNLKKHHQLMQEMSINNAYLYHAL 139


>AC006834-4|AAF40012.1|  392|Caenorhabditis elegans Hypothetical
           protein ZK973.8 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 122 PGLNKAQLADAVQKH-FKSLPVNEREIMTYFIYMVKTNGNKLD 163
           PG N+ QLA ++++H F+ L +N  ++      M+  + N+LD
Sbjct: 280 PGPNRKQLAGSIERHCFEELILNCEDMAYVKELMLMAHTNRLD 322


>U41011-9|AAA82292.1|  359|Caenorhabditis elegans Hypothetical
           protein D2024.1 protein.
          Length = 359

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 17  DQICCLVDDGDRCRRPAGNASYSKRIQKTVALRRLKLNI 55
           ++IC L +DGDR  R   + S  K +       R+  N+
Sbjct: 315 EKICRLTNDGDRMPRNHVDCSVGKNLTSDFIFERIHFNM 353


>AC006618-2|AAK68249.1|  340|Caenorhabditis elegans Glutamine
           synthetase (glutamate-ammonia ligase) protein 1 protein.
          Length = 340

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 116 YKVPTRPGLNKAQLADAVQKHFKSLPVNERE 146
           Y+ P RPG NK  L + +    K  P N R+
Sbjct: 90  YRDPFRPGPNKIALCETLTHDNKPHPTNTRQ 120


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,188,114
Number of Sequences: 27539
Number of extensions: 146041
Number of successful extensions: 298
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 4
length of query: 174
length of database: 12,573,161
effective HSP length: 77
effective length of query: 97
effective length of database: 10,452,658
effective search space: 1013907826
effective search space used: 1013907826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)