Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001024-TA|BGIBMGA001024-PA|IPR013026|Tetratricopeptide
region, IPR008940|Protein prenyltransferase, IPR013618|Domain of
unknown function DUF1736, IPR001440|Tetratricopeptide TPR_1,
IPR013105|Tetratricopeptide TPR_2
         (744 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      27   0.73 
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    25   2.2  

>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 26.6 bits (56), Expect = 0.73
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 454 RGDILIKLNRTKEAQEVYERALLYDSGNPDIYYNLGV 490
           RG +   +N+    Q V    LLY +   D++YN  V
Sbjct: 91  RGQVFTMMNKEMRHQAVVLFRLLYSAKTFDVFYNTAV 127


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 501 ALAYLDKALELEPEHEQALLNSAILLQELGAADLRHLARQRLLKLLDKDATNERVHFNLG 560
           A+AY+    ELEPE     + +    QE G+  ++     +    LD D   +RV+   G
Sbjct: 11  AVAYVSAQAELEPEDTMDYIPTRFRRQERGSIVIQGTKEGKSRPSLDID-YKQRVYDKNG 69

Query: 561 M 561
           M
Sbjct: 70  M 70


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,756
Number of Sequences: 429
Number of extensions: 5944
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 2
length of query: 744
length of database: 140,377
effective HSP length: 63
effective length of query: 681
effective length of database: 113,350
effective search space: 77191350
effective search space used: 77191350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)