Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001023-TA|BGIBMGA001023-PA|undefined
         (128 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ...    26   2.1  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   2.1  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   3.7  

>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 70  DISAIKENRDLRPQTPISNIFLNDFWGTP--IHKKSINVDSERI 111
           D SA++  R  +  T + +IF+ND +GT    H   + VD  R+
Sbjct: 141 DASAVEAFR--KSLTSLGDIFVNDAFGTAHRAHSSMVGVDLPRV 182


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 4/32 (12%)

Query: 63  YCGFVFDDI----SAIKENRDLRPQTPISNIF 90
           Y GFV+DDI     A+K++++L    P+ N F
Sbjct: 878 YLGFVYDDILKNEIAMKDDQELAAIAPLMNNF 909


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 71  ISAIKENRDLRPQTPISNIFLNDFWGTPIHKKSINVDSERIYIKISKGYERAY 123
           I  ++E ++L+   P+  ++L+D+  TP      + DS RI+ +   G+   Y
Sbjct: 222 IIRLEEFKNLKANEPVFFLYLHDYGSTP-----EDFDSLRIFARYLVGFAPLY 269


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.144    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 539,850
Number of Sequences: 5004
Number of extensions: 21073
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 3
length of query: 128
length of database: 2,362,478
effective HSP length: 65
effective length of query: 63
effective length of database: 2,037,218
effective search space: 128344734
effective search space used: 128344734
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 49 (23.8 bits)