Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001023-TA|BGIBMGA001023-PA|undefined
         (128 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)                       56   9e-09
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)                 29   1.2  
SB_27034| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  

>SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 687

 Score = 56.0 bits (129), Expect = 9e-09
 Identities = 25/59 (42%), Positives = 34/59 (57%)

Query: 38  MPDPPRRGLGAVIILACVLVYHNCLYCGFVFDDISAIKENRDLRPQTPISNIFLNDFWG 96
           +P+  R      I +  +L Y N     FVFDD  AI  N+DLRP+ PI  +F++DFWG
Sbjct: 45  LPELSRLHASLTIAIVSLLCYWNSCNGDFVFDDSEAILNNKDLRPEAPIWTLFIHDFWG 103


>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
          Length = 884

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 82  PQTPISNIFLNDFWGTPI 99
           P + +++IF NDFWG P+
Sbjct: 290 PHSSLTSIFRNDFWGEPL 307


>SB_27034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)

Query: 100 HKKSINVDSERIYIKISKGYERAYFKET 127
           +KK + +D E+  + +S+ YE+ Y K+T
Sbjct: 400 YKKKMPLDQEKSKLSLSQIYEQEYLKQT 427


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.144    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,944,354
Number of Sequences: 59808
Number of extensions: 143233
Number of successful extensions: 275
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 3
length of query: 128
length of database: 16,821,457
effective HSP length: 74
effective length of query: 54
effective length of database: 12,395,665
effective search space: 669365910
effective search space used: 669365910
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 55 (26.2 bits)