Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001023-TA|BGIBMGA001023-PA|undefined
         (128 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX538169-1|CAD98046.1|  914|Homo sapiens hypothetical protein pr...    73   2e-13
BC117177-1|AAI17178.1|  914|Homo sapiens transmembrane and tetra...    73   2e-13
BC117175-1|AAI17176.1|  914|Homo sapiens transmembrane and tetra...    73   2e-13
AJ697717-1|CAG26973.1|  914|Homo sapiens SMILE protein protein.        73   2e-13
BC093854-1|AAH93854.1|  836|Homo sapiens transmembrane and tetra...    54   1e-07
BC093852-1|AAH93852.1|  836|Homo sapiens transmembrane and tetra...    54   1e-07
AL359085-2|CAI11004.1|  684|Homo sapiens transmembrane and tetra...    44   1e-04
AL359085-5|CAI11007.1|  760|Homo sapiens transmembrane and tetra...    44   2e-04
AL359085-3|CAI11005.1|  225|Homo sapiens transmembrane and tetra...    44   2e-04
BC020611-1|AAH20611.1|  301|Homo sapiens chromosome X open readi...    29   5.9  
AK021639-1|BAB13860.1|  301|Homo sapiens protein ( Homo sapiens ...    29   5.9  

>BX538169-1|CAD98046.1|  914|Homo sapiens hypothetical protein
           protein.
          Length = 914

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 29/53 (54%), Positives = 40/53 (75%), Gaps = 3/53 (5%)

Query: 50  IILACVLVYHNCLYCGFVFDDISAIKENRDLRPQTPISNIFLNDFWGTPIHKK 102
           ++ AC   Y N L+CGFVFDD+SAI +N+DL P TP+  +F NDFWGTP+ ++
Sbjct: 15  VVTAC---YWNSLFCGFVFDDVSAILDNKDLHPSTPLKTLFQNDFWGTPMSEE 64


>BC117177-1|AAI17178.1|  914|Homo sapiens transmembrane and
           tetratricopeptide repeat containing 3 protein.
          Length = 914

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 29/53 (54%), Positives = 40/53 (75%), Gaps = 3/53 (5%)

Query: 50  IILACVLVYHNCLYCGFVFDDISAIKENRDLRPQTPISNIFLNDFWGTPIHKK 102
           ++ AC   Y N L+CGFVFDD+SAI +N+DL P TP+  +F NDFWGTP+ ++
Sbjct: 15  VVTAC---YWNSLFCGFVFDDVSAILDNKDLHPSTPLKTLFQNDFWGTPMSEE 64


>BC117175-1|AAI17176.1|  914|Homo sapiens transmembrane and
           tetratricopeptide repeat containing 3 protein.
          Length = 914

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 29/53 (54%), Positives = 40/53 (75%), Gaps = 3/53 (5%)

Query: 50  IILACVLVYHNCLYCGFVFDDISAIKENRDLRPQTPISNIFLNDFWGTPIHKK 102
           ++ AC   Y N L+CGFVFDD+SAI +N+DL P TP+  +F NDFWGTP+ ++
Sbjct: 15  VVTAC---YWNSLFCGFVFDDVSAILDNKDLHPSTPLKTLFQNDFWGTPMSEE 64


>AJ697717-1|CAG26973.1|  914|Homo sapiens SMILE protein protein.
          Length = 914

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 29/53 (54%), Positives = 40/53 (75%), Gaps = 3/53 (5%)

Query: 50  IILACVLVYHNCLYCGFVFDDISAIKENRDLRPQTPISNIFLNDFWGTPIHKK 102
           ++ AC   Y N L+CGFVFDD+SAI +N+DL P TP+  +F NDFWGTP+ ++
Sbjct: 15  VVTAC---YWNSLFCGFVFDDVSAILDNKDLHPSTPLKTLFQNDFWGTPMSEE 64


>BC093854-1|AAH93854.1|  836|Homo sapiens transmembrane and
          tetratricopeptide repeat containing 2 protein.
          Length = 836

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 23/41 (56%), Positives = 29/41 (70%)

Query: 57 VYHNCLYCGFVFDDISAIKENRDLRPQTPISNIFLNDFWGT 97
          +Y N L   F +DD  AIK N+DL P+TP ++IF NDFWGT
Sbjct: 14 LYLNTLSADFCYDDSRAIKTNQDLLPETPWTHIFYNDFWGT 54


>BC093852-1|AAH93852.1|  836|Homo sapiens transmembrane and
          tetratricopeptide repeat containing 2 protein.
          Length = 836

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 23/41 (56%), Positives = 29/41 (70%)

Query: 57 VYHNCLYCGFVFDDISAIKENRDLRPQTPISNIFLNDFWGT 97
          +Y N L   F +DD  AIK N+DL P+TP ++IF NDFWGT
Sbjct: 14 LYLNTLSADFCYDDSRAIKTNQDLLPETPWTHIFYNDFWGT 54


>AL359085-2|CAI11004.1|  684|Homo sapiens transmembrane and
           tetratricopeptide repeat containing 4 protein.
          Length = 684

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 16/36 (44%), Positives = 27/36 (75%)

Query: 66  FVFDDISAIKENRDLRPQTPISNIFLNDFWGTPIHK 101
           FVFDD  AI  N+DL+ +TP+ +++ +DFWG+ + +
Sbjct: 42  FVFDDSEAIVNNKDLQAETPLGDLWHHDFWGSRLSR 77


>AL359085-5|CAI11007.1|  760|Homo sapiens transmembrane and
          tetratricopeptide repeat containing 4 protein.
          Length = 760

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 16/32 (50%), Positives = 25/32 (78%)

Query: 66 FVFDDISAIKENRDLRPQTPISNIFLNDFWGT 97
          FVFDD  AI  N+DL+ +TP+ +++ +DFWG+
Sbjct: 61 FVFDDSEAIVNNKDLQAETPLGDLWHHDFWGS 92


>AL359085-3|CAI11005.1|  225|Homo sapiens transmembrane and
          tetratricopeptide repeat containing 4 protein.
          Length = 225

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 16/32 (50%), Positives = 25/32 (78%)

Query: 66 FVFDDISAIKENRDLRPQTPISNIFLNDFWGT 97
          FVFDD  AI  N+DL+ +TP+ +++ +DFWG+
Sbjct: 42 FVFDDSEAIVNNKDLQAETPLGDLWHHDFWGS 73


>BC020611-1|AAH20611.1|  301|Homo sapiens chromosome X open reading
           frame 21 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 71  ISAIKENRDLRPQTPISNIFLNDF 94
           I++IKE   L+ Q PISN  LN++
Sbjct: 190 ITSIKEKSSLQMQNPISNAVLNEY 213


>AK021639-1|BAB13860.1|  301|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11577 fis, clone HEMBA1003556. ).
          Length = 301

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 71  ISAIKENRDLRPQTPISNIFLNDF 94
           I++IKE   L+ Q PISN  LN++
Sbjct: 190 ITSIKEKSSLQMQNPISNAVLNEY 213


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.325    0.144    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,104,921
Number of Sequences: 224733
Number of extensions: 623982
Number of successful extensions: 1531
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1520
Number of HSP's gapped (non-prelim): 11
length of query: 128
length of database: 73,234,838
effective HSP length: 82
effective length of query: 46
effective length of database: 54,806,732
effective search space: 2521109672
effective search space used: 2521109672
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 60 (28.3 bits)