Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001023-TA|BGIBMGA001023-PA|undefined
         (128 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   1.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   4.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   4.3  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    20   7.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   10.0 

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 80  LRPQTPISNIFLNDFWGTPIHKKSINVDS 108
           L P+TPI N++ N+   T       N+D+
Sbjct: 27  LSPRTPIKNVYKNNI-ETKNQLSPFNIDT 54


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 103 SINVDSERIYIKISKGYERAYFKET 127
           SI+V+S  ++I I K  ++ Y K +
Sbjct: 331 SISVESNTMFINILKFLKQKYVKNS 355


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 45  GLGAVIILACVLVYHNCL 62
           G+G V++ A VL    CL
Sbjct: 565 GIGVVVLFAVVLAGATCL 582


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)

Query: 42  PRRGLGAVIILACVLVYHNCLYC 64
           P RG G   I    L  HN +YC
Sbjct: 141 PVRGAGKSNITMYDLKSHNDIYC 163


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
          protein.
          Length = 459

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 46 LGAVIILACVLVYHNCLYCGFVFDDISAIKENRDLRPQTPISNIFLN 92
          L   +I+   L Y      GFV + I+ I   R+   QTP +    N
Sbjct: 28 LPLTLIVPITLTYVVIFVTGFVGNIITCIVIWRNPSMQTPTNYYLFN 74


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.144    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,426
Number of Sequences: 429
Number of extensions: 1188
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 128
length of database: 140,377
effective HSP length: 51
effective length of query: 77
effective length of database: 118,498
effective search space:  9124346
effective search space used:  9124346
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.1 bits)
S2: 39 (19.8 bits)