GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001023-TA|BGIBMGA001023-PA|undefined
         (128 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical pr...    42   1e-04
AF016427-4|AAB65353.1|  774|Caenorhabditis elegans Hypothetical ...    42   1e-04
U64845-12|AAC48025.1|  475|Caenorhabditis elegans Hypothetical p...    27   4.1  
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    27   5.4  
U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z75554-1|CAA99953.3|  681|Caenorhabditis elegans Hypothetical pr...    26   9.4  

>U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical
          protein F38B6.6 protein.
          Length = 690

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 19/51 (37%), Positives = 28/51 (54%)

Query: 49 VIILACVLVYHNCLYCGFVFDDISAIKENRDLRPQTPISNIFLNDFWGTPI 99
          ++I   ++ Y +CL   FVFDD  +I  N  +  + P+  IF  DFWG  I
Sbjct: 34 ILISLSIIPYLSCLGGDFVFDDAESIVNNPIVNGKDPLLQIFSRDFWGRSI 84


>AF016427-4|AAB65353.1|  774|Caenorhabditis elegans Hypothetical
          protein F32D1.3 protein.
          Length = 774

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 49 VIILACVLVYHNCLYCGFVFDDISAIKENRDLRPQTPISNIFL-NDFWGTPI 99
          ++ L   +VY   L   FV+DD  AI  N D+  +TP  ++ + NDFWG PI
Sbjct: 25 LVALFASIVYRITLNADFVYDDRPAILTNDDVLGRTPWRSLIVHNDFWGNPI 76


>U64845-12|AAC48025.1|  475|Caenorhabditis elegans Hypothetical
           protein F45F2.1 protein.
          Length = 475

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 49  VIILACVLVYHNCLYCGFVFDDISAIKENRDLRP-QTPISNIFL 91
           + IL C +V+  CL+   + +    I  NRDL P +  I+ IFL
Sbjct: 239 ISILTCGIVFQ-CLFKHIILNQEFVISPNRDLMPHEKNINIIFL 281


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
           protein F47C12.1 protein.
          Length = 1827

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 59  HNCLYCGFVFDDISAIKENRDL--RPQTPISNIFLNDFWGTPIHKKSINVDSERIYI 113
           H+  +C F FDD S   E+  +     TP + + L  F G    KK I   +  +YI
Sbjct: 31  HDIKFCNFQFDDFSLRAEDSLIVYNGATPSATV-LASFSGNLTTKKYITSSTNIVYI 86


>U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical
          protein D1009.1a protein.
          Length = 655

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 37 DMPDPPRRGLGAVIILACVLVYHNCLYCGFVF 68
          +MPD P+  L   ++ A VL   N ++  FVF
Sbjct: 3  EMPDSPKFALVTFVVYAVVLYNVNSVFWKFVF 34


>Z75554-1|CAA99953.3|  681|Caenorhabditis elegans Hypothetical
           protein ZC455.1 protein.
          Length = 681

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 84  TPISNIFLNDFWGTPIHKKS 103
           TPI  +   D WGTP H +S
Sbjct: 9   TPIKMVGSQDSWGTPPHYRS 28


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.325    0.144    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,963,778
Number of Sequences: 27539
Number of extensions: 112413
Number of successful extensions: 266
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 7
length of query: 128
length of database: 12,573,161
effective HSP length: 74
effective length of query: 54
effective length of database: 10,535,275
effective search space: 568904850
effective search space used: 568904850
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 54 (25.8 bits)