GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001023-TA|BGIBMGA001023-PA|undefined
         (128 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16250.1 68415.m01861 leucine-rich repeat transmembrane prote...    27   3.0  
At2g19010.1 68415.m02219 GDSL-motif lipase/hydrolase family prot...    26   9.1  

>At2g16250.1 68415.m01861 leucine-rich repeat transmembrane
          protein kinase, putative 
          Length = 915

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 38 MPDPPRRGLGAVIILACVLVYHNCLYCG 65
          M D  R  LG V++L C++++ +C+  G
Sbjct: 1  MVDQRRSALGFVLLLLCLVLFFDCVVVG 28


>At2g19010.1 68415.m02219 GDSL-motif lipase/hydrolase family
          protein similar to family II lipase EXL1 GI:15054382
          from [Arabidopsis thaliana]; contains Pfam profile
          PF00657: GDSL-like Lipase/Acylhydrolase
          Length = 344

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 46 LGAVIILACVLVYHNCLYCGFVF-DDISAIKENRDLRPQTPIS-NIFLNDF 94
          + A+I  A  +VY     C FVF D +S    N +L+ +  ++ + + NDF
Sbjct: 8  VAAIIFTAATVVYGQQAPCFFVFGDSMSDNGNNNNLKSEAKVNFSPYGNDF 58


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.325    0.144    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,056
Number of Sequences: 28952
Number of extensions: 102631
Number of successful extensions: 234
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 2
length of query: 128
length of database: 12,070,560
effective HSP length: 73
effective length of query: 55
effective length of database: 9,957,064
effective search space: 547638520
effective search space used: 547638520
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 54 (25.8 bits)