Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001022-TA|BGIBMGA001022-PA|IPR008952|Tetraspanin,
IPR000301|CD9/CD37/CD63 antigen, IPR000437|Prokaryotic membrane
lipoprotein lipid attachment site
(190 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1013 + 25305531-25305611,25305793-25305861,25306115-253062... 29 2.4
04_04_0418 + 25077748-25078101,25079413-25079538,25080683-250815... 28 4.1
01_06_1775 - 39808794-39808919,39809021-39809127,39810594-39812178 28 4.1
11_04_0101 - 13469731-13469898,13470163-13470279,13470528-134707... 27 7.2
03_01_0225 + 1784211-1784324,1784398-1784668,1784992-1785248,178... 27 7.2
01_06_1219 - 35490475-35491635 27 7.2
07_01_0594 + 4428440-4429837 27 9.6
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203 27 9.6
02_01_0748 + 5566073-5567620 27 9.6
>12_02_1013 +
25305531-25305611,25305793-25305861,25306115-25306208,
25306292-25306396,25306577-25306660,25306793-25306866,
25307936-25308001,25308892-25308948,25309433-25309477,
25309602-25309655,25310097-25310237
Length = 289
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 2 RILELQKYFIGIYIMLIASLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIG 59
R+L +Q + + ++ SLG++ V + GC + + + GY+G++ A+F L+G
Sbjct: 17 RVLSIQSHTVQVF-----SLGLLWVCYSGCDNVCGK---MKDGYVGNKSAVFPLQLLG 66
>04_04_0418 +
25077748-25078101,25079413-25079538,25080683-25081593,
25081970-25082453
Length = 624
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 26 VAFLGCGSALMENVTLLYGYIGSQLALFVFGLIG-ACVVLDFST 68
+ LG + + ENV L+ G + ++L ++ LIG AC +L F T
Sbjct: 60 LTMLGVANDVGENVGLVPGVLANRLPPWLILLIGSACALLGFGT 103
>01_06_1775 - 39808794-39808919,39809021-39809127,39810594-39812178
Length = 605
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/65 (24%), Positives = 28/65 (43%)
Query: 78 RNVIVRLINNPQHDGSREILRMVQEGIGCCGADGPMDYINLNKPLPSECRDSVTGNAYFH 137
R +V + H G I ++V I CG G + +N + S+C D + F
Sbjct: 244 RVALVTVAQACAHLGDGRIGKLVHNEIVICGFSGELPAVNSLITMYSKCEDLSSARLLFD 303
Query: 138 GCVDE 142
G +++
Sbjct: 304 GTMEK 308
>11_04_0101 -
13469731-13469898,13470163-13470279,13470528-13470702,
13472702-13472804,13472847-13472971,13473252-13473457
Length = 297
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 91 DGSREILRMVQEGIGCCGADGPMDYINLNKPLPSECRDSVTGNAY-FHGCVDEMTWYLEG 149
D +R I+ + G+ C D + L L + S + NA G E+TWYL+
Sbjct: 235 DEARNIIATRKLGVSCVLVDTGITLEKLRTGLSNYANRSASPNAEPAGGRSAEITWYLDV 294
Query: 150 KTG 152
TG
Sbjct: 295 ATG 297
>03_01_0225 +
1784211-1784324,1784398-1784668,1784992-1785248,
1785338-1785450,1791599-1791746,1791943-1792080,
1792448-1792525
Length = 372
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 14 YIMLIASLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLI 58
YI L S V+ GCG L + ++++G L L +GL+
Sbjct: 99 YIKLTGSEAFCPVSGGGCGDVLQSDYSVVFGIPLPLLGLVAYGLV 143
>01_06_1219 - 35490475-35491635
Length = 386
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 96 ILRMVQEGIGCCGADGPMDYINLNKPLPSECRDSVTGNA 134
+ R +EG+ C GADG L+ PLP+ R + +A
Sbjct: 6 VTRRDKEGLRCNGADGEKLPQLLDSPLPTPRRSCASADA 44
>07_01_0594 + 4428440-4429837
Length = 465
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 75 PLIRNVIVRLINNPQHDGSREILRMVQEGIGCCGADGPMDYINLNKPLPS 124
P++RNV RL NP DG+ + + E + C DGPM + +P+
Sbjct: 45 PVLRNVFRRLPRNPDFDGATFLSKPWLE-LPC---DGPMVIAEPQRLMPA 90
>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
Length = 740
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 126 CRDSVTGNAYFHGCVDEMTWYLEGKTGWLAGIVLASCMVSIINAVMSLVLIQAVKK 181
C D GNAY C D + + GW I ++S +V +I + +I A ++
Sbjct: 312 CPDKTIGNAYNGTCGDN-----KSQLGWKIAIGISSGVVILIITASCVYMIHAKRR 362
>02_01_0748 + 5566073-5567620
Length = 515
Score = 27.1 bits (57), Expect = 9.6
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 28 FLGCGSALMENVTLLYGYIGSQLALFVFGLIGACVVLDFSTYDSSIQPLIRNVIVRLINN 87
F G G A T ++G G LAL L G + F + D+ + +I ++ L
Sbjct: 259 FAGTGGAASATTTSVFGDSGETLALLERRLRGVRFLAVFDSVDARRRRVIDAIMPTLRRG 318
Query: 88 PQHDGSREIL--RMVQEGIGCCGADGPMDYINLNKPLPSE 125
+ GS+ I+ R + G A D I L P P+E
Sbjct: 319 RR--GSKVIVTSRHAEHVAGLAAA--AADTITLRPPPPAE 354
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.326 0.143 0.433
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,323,757
Number of Sequences: 37544
Number of extensions: 214345
Number of successful extensions: 561
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 559
Number of HSP's gapped (non-prelim): 9
length of query: 190
length of database: 14,793,348
effective HSP length: 78
effective length of query: 112
effective length of database: 11,864,916
effective search space: 1328870592
effective search space used: 1328870592
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)
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