Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001022-TA|BGIBMGA001022-PA|IPR008952|Tetraspanin,
IPR000301|CD9/CD37/CD63 antigen, IPR000437|Prokaryotic membrane
lipoprotein lipid attachment site
         (190 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin fam...    38   0.003
AL021487-1|CAA16352.4|  241|Caenorhabditis elegans Hypothetical ...    36   0.014
Z73908-1|CAA98130.2|  230|Caenorhabditis elegans Hypothetical pr...    36   0.018
Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical pr...    34   0.056
AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin f...    34   0.056
AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin f...    34   0.056
AL132948-6|CAC51071.1|  321|Caenorhabditis elegans Hypothetical ...    32   0.30 
U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    29   1.6  
Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z70036-2|CAA93876.1|  757|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U80842-5|AAK71419.2|  305|Caenorhabditis elegans Serpentine rece...    27   8.5  

>U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin family
           protein 17 protein.
          Length = 243

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 4/108 (3%)

Query: 14  YIMLIASLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIGACVVLDFSTYDSSI 73
           Y+ L+     ++V FLG   A+  +  LL  ++   +  F+  +    + L +     S+
Sbjct: 28  YVSLVCGCAQLLVGFLGLCGAVNRSRFLLLAFVMFLIGTFLADVAMGTLSLFYKDKVYSV 87

Query: 74  QPLIRNVIVR----LINNPQHDGSREILRMVQEGIGCCGADGPMDYIN 117
           +  +R ++      + + P++    E +  +Q    CCG+ GP DYI+
Sbjct: 88  KENVREIVKSKYGVMTSEPENKMVTEFIDKLQFYEKCCGSLGPTDYIS 135


>AL021487-1|CAA16352.4|  241|Caenorhabditis elegans Hypothetical
           protein Y45F10B.1 protein.
          Length = 241

 Score = 36.3 bits (80), Expect = 0.014
 Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 9/164 (5%)

Query: 23  IMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIGACVVLDFSTYDSSIQPLIRNVIV 82
           ++V+ F GC +    + T L  ++     +FV  ++   +V+  +  D   +  +     
Sbjct: 75  MVVLGFCGCFAVGFGSKTALSVHLVLVFIVFVVKIVA--IVMFLANNDHLRREFVGVYRD 132

Query: 83  RLINNPQHDGSR--EILRMVQEGIGCCGADGPMDYINL-NKPLPSECRDSVTGNAYFHGC 139
            L+ N  H+ SR    L  V   + CCGA+G  D++   N P   EC  +        GC
Sbjct: 133 ELVAN-YHNNSRTKNTLDWVHTSLKCCGANGCEDFLPAGNFPTSCEC-GTKNAVVRMEGC 190

Query: 140 VDEMTW-YLEGKTGWLAGIVLASCMVSIINAVMSLVLIQAVKKE 182
              +TW   E  T  +A + L   ++ +   + + ++I  +++E
Sbjct: 191 A-LITWAVFEDGTLQVAFLGLICMLIELGLMIFAAIVIDRIRRE 233


>Z73908-1|CAA98130.2|  230|Caenorhabditis elegans Hypothetical
           protein F53B2.2 protein.
          Length = 230

 Score = 35.9 bits (79), Expect = 0.018
 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 10/166 (6%)

Query: 22  GIMVVAFL-GCGSALMENVTLLYGYIGSQLALFVFGLIGACVVLDFSTYDSSIQPLIRNV 80
           G MVV  L GC +    + T L  ++     +FV  ++   +V+  +  D   +  +   
Sbjct: 62  GCMVVLGLCGCFAVCFGSKTALSVHLVLVFLVFVVKIVA--IVMFLANKDHLRREFVGVY 119

Query: 81  IVRLINNPQHDGSR--EILRMVQEGIGCCGADGPMDYINL-NKPLPSECRDSVTGNAYFH 137
              L+ N  H+ SR    L  V   + CCGA+G  D++   N P   EC  +        
Sbjct: 120 RDELVAN-YHNNSRTKNTLDWVHTSLKCCGANGCEDFLPAGNFPTSCEC-GTKNAMVRME 177

Query: 138 GCVDEMTW-YLEGKTGWLAGIVLASCMVSIINAVMSLVLIQAVKKE 182
           GC   +TW   E  T  +A + L   ++ +   + + ++I  +++E
Sbjct: 178 GCA-LITWAVFEDGTLQVAFLGLICMLIELGLMIFAAIVIDRIRRE 222


>Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical
           protein T14G10.6 protein.
          Length = 308

 Score = 34.3 bits (75), Expect = 0.056
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 16  MLIASLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIGACVVLDF--STYDSSI 73
           +LI      ++ F GC  +L EN + L  Y  + L L +     A V         D+ I
Sbjct: 88  LLIVGFLTFIIGFSGCVGSLRENTSFLTFY-STLLGLLLIAEFSAGVFAYACRDQLDNYI 146

Query: 74  QPLIRNVIVRLINNPQHDGSREILRMVQEGIGCCGADGPMDYINLNKPLPSECRDSVT-- 131
           + L+ +V+V   ++P     + ++  +QE   CCG +G  D+ + N     E R+  +  
Sbjct: 147 RNLLNDVVVGYRDDPD---LQLLIDSMQETWMCCGINGADDW-DRNTYFSIEAREVASPE 202

Query: 132 -GNAYFHGCVD 141
            G   F  C++
Sbjct: 203 AGGVPFSCCIN 213


>AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform a protein.
          Length = 427

 Score = 34.3 bits (75), Expect = 0.056
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 8/120 (6%)

Query: 15  IMLIASLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIGACVVLDFST--YDSS 72
           ++ I    I VV+F G   AL +N+ LL  +      +F+  ++   V L F T  Y  +
Sbjct: 75  LISIFGFSICVVSFFGFMGALRDNIFLLKCFAA---CVFLSYILVVAVTLVFFTLFYTDT 131

Query: 73  IQPLIRN--VIVRLINNPQHDGSREILRMVQEGIGCCGADG-PMDYINLNKPLPSECRDS 129
            + L  N  ++  + N   +    EI+  +QE + CCG       Y + N      C +S
Sbjct: 132 TEGLSANWLLLYAVKNYHTNRNLAEIMDALQENLECCGVSSIAQGYRDWNMSYQFNCTNS 191


>AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform b protein.
          Length = 451

 Score = 34.3 bits (75), Expect = 0.056
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 8/120 (6%)

Query: 15  IMLIASLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIGACVVLDFST--YDSS 72
           ++ I    I VV+F G   AL +N+ LL  +      +F+  ++   V L F T  Y  +
Sbjct: 99  LISIFGFSICVVSFFGFMGALRDNIFLLKCFAA---CVFLSYILVVAVTLVFFTLFYTDT 155

Query: 73  IQPLIRN--VIVRLINNPQHDGSREILRMVQEGIGCCGADG-PMDYINLNKPLPSECRDS 129
            + L  N  ++  + N   +    EI+  +QE + CCG       Y + N      C +S
Sbjct: 156 TEGLSANWLLLYAVKNYHTNRNLAEIMDALQENLECCGVSSIAQGYRDWNMSYQFNCTNS 215


>AL132948-6|CAC51071.1|  321|Caenorhabditis elegans Hypothetical
           protein Y39B6A.6 protein.
          Length = 321

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 3/123 (2%)

Query: 5   ELQKYFIGIYIMLIASLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGL-IGACVV 63
           E    F   YI+++    +MVVA LGC      +   L  Y      L V  L  G  ++
Sbjct: 106 EAPTLFAFSYIIIVLGAVMMVVAMLGCCGITGRSRPFLIIYSMVVFLLLVATLSCGIYLL 165

Query: 64  LDFSTYDSSIQPLIRNVIVRLINNPQHDGSREILRMVQEGIGCCGADGPMDYINLNKPLP 123
                 D  +   +  ++      P     +E L  +Q    CCG  G  D+    + +P
Sbjct: 166 YKKDGLDVELSDALNYMVQHYYQGP--GVVQESLDHLQTAFRCCGNAGCSDFRVFRQDIP 223

Query: 124 SEC 126
             C
Sbjct: 224 RSC 226


>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 14/116 (12%)

Query: 14  YIMLIASLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIGACV--VLDFSTYDS 71
           Y++ +    ++VVAFLGC  A  E   LL  Y  S L L +   I A +   L    +++
Sbjct: 84  YLLFVGGFIVIVVAFLGCCGAAKEWRPLLCCY-SSCLMLILAIQIAATIYAFLHSHMFEN 142

Query: 72  SIQPLIRNVI--------VRLINNPQHDG--SREILRMVQEGIGCCGADGPMDYIN 117
             + ++ + +        +++ NNPQ DG   +     +     CCG D  +   N
Sbjct: 143 DFRDILHSSLKMYNGTDNMKVSNNPQ-DGLLVKTAWDKIMIEKSCCGVDSKIGEFN 197


>Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical
           protein F33C8.3 protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 106 CCGADGPMDYIN-LNKPLPSECRDSVTGNAYFHGCVDEMTWYLEGKTGWLAGIVLASCMV 164
           CC   G + Y N   +       ++        GC D +   +      + G+ +  C+V
Sbjct: 203 CCNEHGKLSYPNNCGRSFSQAPLNTYAQFINTRGCADAVYESVSSSLSLIVGVCVVLCIV 262

Query: 165 SIINAVMSLVL 175
            ++  V+S+ L
Sbjct: 263 QLLGIVLSMTL 273


>Z70036-2|CAA93876.1|  757|Caenorhabditis elegans Hypothetical
           protein T01B4.2 protein.
          Length = 757

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 29  LGCGSALMENVTLLYGYIGSQLALFVFGLIG 59
           L C + L    T++YG IG  L LFV  + G
Sbjct: 270 LACKTNLGRVATIIYGLIGIPLMLFVLKIFG 300


>U80842-5|AAK71419.2|  305|Caenorhabditis elegans Serpentine
           receptor, class i protein50 protein.
          Length = 305

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/52 (23%), Positives = 32/52 (61%), Gaps = 4/52 (7%)

Query: 55  FGLIGACVVLDFSTYDSSIQPLIRNVIVRLINNPQHDGSREIL-RMVQEGIG 105
           FG++  C++ +F+TYD  +  +++ V ++ ++N  +   R +L  ++ + +G
Sbjct: 200 FGIVLYCIICNFATYDMLL--MLKEVQLK-VSNQNYKRHRSVLTTLIAQSLG 248


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.326    0.143    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,424,202
Number of Sequences: 27539
Number of extensions: 176652
Number of successful extensions: 547
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 542
Number of HSP's gapped (non-prelim): 11
length of query: 190
length of database: 12,573,161
effective HSP length: 77
effective length of query: 113
effective length of database: 10,452,658
effective search space: 1181150354
effective search space used: 1181150354
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)