Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001022-TA|BGIBMGA001022-PA|IPR008952|Tetraspanin,
IPR000301|CD9/CD37/CD63 antigen, IPR000437|Prokaryotic membrane
lipoprotein lipid attachment site
         (190 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    51   6e-09
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.3  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 51.2 bits (117), Expect = 6e-09
 Identities = 37/180 (20%), Positives = 79/180 (43%), Gaps = 9/180 (5%)

Query: 10  FIGIYIMLIASLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIGACVVLDFSTY 69
           F  I ++++ S+ I V++F GC  A+ E+  +   +    L + +  +  A         
Sbjct: 50  FPSITLIVLGSI-IFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKN 108

Query: 70  DSSIQPLIRNVIVRLINNPQHDGSREILRMVQEGIGCCGADGPMDYINLNKPLPSECRDS 129
           D + + +             +  S++ +  +Q+ + CCG     DY   +KP+P+ C +S
Sbjct: 109 DDNFRNISEKYQEIFNGYFLNSESKDFIDFIQKNLQCCGVHSLSDY--NDKPIPASCCNS 166

Query: 130 ------VTGNAYFHGCVDEMTWYLEGKTGWLAGIVLASCMVSIINAVMSLVLIQAVKKEE 183
                    N+Y +GCV+ +   ++        + +A  +V +I  + +L L  ++K  E
Sbjct: 167 PENNTCSISNSYTNGCVEALKDTVKLAGTVFGSVAIAIAIVELIGIICALCLANSIKNAE 226


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 78  RNVIVRLINNPQHDGSREILRMVQEGIGCCGADGPMDYINLNKPLPSECRD 128
           + ++  L+ + ++D  + +L  VQ+   CCG   P D   L+    +   D
Sbjct: 62  KEILDNLLLSTRYD--KRLLPPVQDADFCCGMRWPGDATGLSNRSSTSSND 110


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.143    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,427
Number of Sequences: 429
Number of extensions: 2184
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 190
length of database: 140,377
effective HSP length: 54
effective length of query: 136
effective length of database: 117,211
effective search space: 15940696
effective search space used: 15940696
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 41 (20.6 bits)