GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001022-TA|BGIBMGA001022-PA|IPR008952|Tetraspanin,
IPR000301|CD9/CD37/CD63 antigen, IPR000437|Prokaryotic membrane
lipoprotein lipid attachment site
         (190 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    23   2.1  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    23   2.1  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    22   2.7  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   4.8  

>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 115 YINLNKP-LPSECRDSVTGNAYFHGCVDEM 143
           Y+   +P L + CR +     YF GC+D +
Sbjct: 73  YMLFREPQLHNLCRKNCFTTDYFKGCIDTL 102


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 115 YINLNKP-LPSECRDSVTGNAYFHGCVDEM 143
           Y+   +P L + CR +     YF GC+D +
Sbjct: 73  YMLFREPQLHNLCRKNCFTTDYFKGCIDTL 102


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 115 YINLNKP-LPSECRDSVTGNAYFHGCVDEM 143
           Y+   +P L + CR       YF GCV+ +
Sbjct: 73  YMLFREPQLHNLCRSECFSTKYFVGCVESL 102


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 6/23 (26%), Positives = 15/23 (65%)

Query: 152 GWLAGIVLASCMVSIINAVMSLV 174
           GW   ++LA C+ S ++++ + +
Sbjct: 225 GWTLILILAKCITSSLSSLYTCI 247


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.326    0.143    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,349
Number of Sequences: 317
Number of extensions: 1640
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 4
length of query: 190
length of database: 114,650
effective HSP length: 53
effective length of query: 137
effective length of database: 97,849
effective search space: 13405313
effective search space used: 13405313
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 41 (20.6 bits)