GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001022-TA|BGIBMGA001022-PA|IPR008952|Tetraspanin,
IPR000301|CD9/CD37/CD63 antigen, IPR000437|Prokaryotic membrane
lipoprotein lipid attachment site
         (190 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    32   0.062
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    27   1.8  
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz...    25   7.1  
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    25   9.4  

>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 31.9 bits (69), Expect = 0.062
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 17  LIASLGIMVVAFLGCGS-ALMENV-TLLYGYIGSQLALFVFGLIGACVVLDFSTYDSSIQ 74
           L++S+ I++ A   CG  ALM  +  +LY Y+G +    +  ++GA   +      SS+Q
Sbjct: 838 LVSSITIVLKA---CGEEALMRKLGVVLYEYLGEEYPEVLGSILGAIKAIVSVVGMSSMQ 894

Query: 75  PLIRNVIVRL 84
           P IR+++ RL
Sbjct: 895 PPIRDLLPRL 904


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 50 LALFVFGLIGACVVLDFSTYDSSIQ 74
          L +F+F L G+C++  F  Y S+I+
Sbjct: 72 LQIFLFSLFGSCMLFRFIKYPSTIK 96


>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 121 PLPSECRDSVTGNAYFHGCVDEM 143
           P+P+ C +   G   F GCV+E+
Sbjct: 157 PIPAGCSEHPYGGLGFVGCVEEI 179


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 10/105 (9%)

Query: 4   LELQKYFIGIYIM-LIASLGIMVVAFLGCGSALMENVTLLYGY-IGS--QLALFV---FG 56
           + + K F+G+ I+ ++ +    V A +      M+   L  G  IGS  Q+ALF+     
Sbjct: 294 VNISKTFVGLVILPVVGNAAEHVTAIVVSYRGQMD---LALGVAIGSSIQIALFLAPFLV 350

Query: 57  LIGACVVLDFSTYDSSIQPLIRNVIVRLINNPQHDGSREILRMVQ 101
           ++G  +    + Y  S++ +I  V V L+N    DG+   L  VQ
Sbjct: 351 IVGWIISQPLTLYFESLETVILFVSVFLVNYLIQDGATHWLEGVQ 395


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.143    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 818,299
Number of Sequences: 5004
Number of extensions: 31963
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 5
length of query: 190
length of database: 2,362,478
effective HSP length: 69
effective length of query: 121
effective length of database: 2,017,202
effective search space: 244081442
effective search space used: 244081442
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)